TreatCFM001372's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Glucagon signaling pathway | 0.003102103 | KEGG pathway |
| DNA endoreduplication | 0.006753985 | GO:0042023 |
| glycosaminoglycan biosynthetic process | 0.006753985 | GO:0006024 |
| trichome branching | 0.006753985 | GO:0010091 |
| heparan sulfate proteoglycan biosynthetic process | 0.006753985 | GO:0015012 |
| Cell cycle | 0.006753985 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006820393 | cazy family |
| Ubiquitin_Proteasome_system, E3: HECT | 0.006820393 | ubs family |
| transcriptional repressor complex | 0.007084392 | GO:0017053 |
| glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.007084392 | GO:0001888 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.011799994 | GO:0050508 |
| Transcription_related, Transcription factor: MYB-related | 0.015118855 | TF family |
| Ubiquitin mediated proteolysis | 0.028625431 | KEGG pathway |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.030534618 | GO:0042787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002206 | AT3G55830 (2.00E-104) | EPC1|ECTOPICALLY PARTING CELLS |
| CRO_T003497 | - | - |
| CRO_T007507 | AT5G22450 (7.00E-137) | unknown protein |
| CRO_T010968 | AT3G21430 (0) | ALY3|ALWAYS EARLY 3 |
| CRO_T025191 | AT4G38600 (0) | KAK|KAKTUS; UPL3|UBIQUITIN-PROTEIN LIGASE 3 |
| CRO_T032820 | AT3G06670 (1.00E-138) | binding |
| CRO_T032825 | AT4G32160 (2.00E-91) | Phox (PX) domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000155 | dTTP biosynthetic process dTDP biosynthetic process dUDP biosynthetic process positive regulation of autophagy response to extracellular stimulus thymidylate kinase activity organ morphogenesis pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotides de novo biosynthesis I regulation of root development lateral root development reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response fruit development RNA biosynthetic process defense response to fungus, incompatible interaction uridylate kinase activity endoplasmic reticulum heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription factor: AP2 Transcription_related, Transcription regulator: mTERF histone acetyltransferase activity histone acetylation Pyrimidine metabolism Ras signaling pathway jasmonic acid mediated signaling pathway response to ethylene phosphoprotein phosphatase activity DNA-directed RNA polymerase activity | details |
| TreatCFM000355 | response to far red light heparan sulfate proteoglycan biosynthetic process positive regulation of biological process red or far-red light signaling pathway glycosaminoglycan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity core promoter sequence-specific DNA binding glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity transcription from RNA polymerase II promoter transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding poly(A) RNA binding Spliceosome RNA processing Transcription_related, Transcription factor: FAR1 ATP-dependent RNA helicase activity | details |
| TreatCFM001048 | Ubiquitin_Proteasome_system, E3: RING transcriptional repressor complex vegetative phase change developmental process involved in reproduction organ senescence detection of nutrient Apelin signaling pathway retromer complex sugar mediated signaling pathway Cell cycle primary root development retrograde transport, endosome to Golgi Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: MYB-related Endocytosis | details |
| TreatCFM001382 | pyrimidine ribonucleosides salvage I Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I intracellular positive regulation of autophagy RNA biosynthetic process activation of MAPKK activity oxidized purine nucleobase lesion DNA N-glycosylase activity MAPK cascade cytosolic small ribosomal subunit MAP kinase kinase kinase activity damaged DNA binding small GTPase mediated signal transduction DNA repair | details |
| TreatCFM001541 | ligase activity Glucagon signaling pathway Toll and Imd signaling pathway transcriptional repressor complex glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity postreplication repair heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process protein K63-linked ubiquitination Cell cycle glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding Ubiquitin mediated proteolysis | details |
| TreatCFM001542 | ligase activity transcriptional repressor complex Glucagon signaling pathway Toll and Imd signaling pathway postreplication repair vegetative phase change protein K63-linked ubiquitination organ senescence detection of nutrient developmental process involved in reproduction sugar mediated signaling pathway Cell cycle primary root development Apelin signaling pathway cytoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E2: UBC Ubiquitin_Proteasome_system, E3: HECT nucleus abscisic acid-activated signaling pathway Ubiquitin mediated proteolysis | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001751 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT histone ubiquitination DNA endoreduplication innate immune response chloride transport glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process protein monoubiquitination actin filament depolymerization trichome branching reproductive structure development glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity voltage-gated chloride channel activity Regulation of actin cytoskeleton regulation of anion transmembrane transport post-embryonic development Transcription_related, Transcription factor: C3H ion transmembrane transport Ubiquitin mediated proteolysis actin cytoskeleton single-organism cellular process protein ubiquitination involved in ubiquitin-dependent protein catabolic process actin binding metal ion binding | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |