TreatCFM001387's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-mimosine synthase activity | 0.002570268 | GO:0050461 |
| beta-pyrazolylalanine synthase activity | 0.002570268 | GO:0047458 |
| pyrazolylalanine synthase activity | 0.002570268 | GO:0050234 |
| cysteine synthase activity | 0.009632807 | GO:0004124 |
| 3-phosphoinositide biosynthesis | 0.011673629 | plantCyc |
| adenosine ribonucleotides de novo biosynthesis | 0.011673629 | plantCyc |
| L-cysteine biosynthesis I | 0.011673629 | plantCyc |
| Ubiquitin_Proteasome_system, E3: U-box | 0.019000978 | ubs family |
| Autophagy - animal | 0.019479062 | KEGG pathway |
| cellular amino acid biosynthetic process | 0.027278711 | GO:0008652 |
| cysteine biosynthetic process from serine | 0.027278711 | GO:0006535 |
| plant-type vacuole | 0.030829539 | GO:0000325 |
| regulation of cellular process | 0.0403145 | GO:0050794 |
| intracellular ribonucleoprotein complex | 0.04359136 | GO:0030529 |
| viral nucleocapsid | 0.04359136 | GO:0019013 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001016 | AT2G32760 (8.00E-24) | unknown protein |
| CRO_T006312 | AT3G01400 (4.00E-67) | ARM repeat superfamily protein |
| CRO_T008322 | AT4G14880 (1.00E-90) | OASA1|O-acetylserine (thiol) lyase (OAS-TL) isoform A1; OLD3|ONSET OF LEAF DEATH 3 |
| CRO_T013595 | AT3G58730 (1.00E-113) | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) |
| CRO_T025292 | AT5G66010 (3.00E-10) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T025619 | AT4G31270 (5.00E-37) | sequence-specific DNA binding transcription factors |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000208 | adenosine ribonucleotides de novo biosynthesis Golgi apparatus cell division site cell plate plant-type vacuole nuclear envelope cytokinesis by cell plate formation nucleic acid binding O-acetyltransferase activity cell wall organization or biogenesis | details |
| TreatCFM001186 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis Lewis a epitope biosynthetic process L-methionine biosynthetic process from S-adenosylmethionine fucosylation S-methyl-5-thio-α-D-ribose 1-phosphate degradation adenosine ribonucleotides de novo biosynthesis L-methionine biosynthetic process from methylthioadenosine fucosyltransferase activity ribosomal small subunit assembly S-methyl-5-thioribose-1-phosphate isomerase activity plant-type vacuole Golgi cisterna membrane protein glycosylation Ubiquitin_Proteasome_system, E3: U-box Cysteine and methionine metabolism | details |
| TreatCFM001479 | magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity regulation of actin filament polymerization response to very low light intensity stimulus alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding vegetative to reproductive phase transition of meristem actin cytoskeleton integral component of membrane viral nucleocapsid intracellular ribonucleoprotein complex Endocytosis | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM002133 | Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation xylogalacturonan biosynthesis Insulin signaling pathway Golgi cisterna membrane fucosyltransferase activity exocyst protein glycosylation exocytosis Ubiquitin_Proteasome_system, E3: U-box | details |
Expression profiles
 Show details about module gene expression profiling |