TreatCFM001990's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
simple leaf morphogenesis | 0.01038718 | GO:0060776 |
CDP-diacylglycerol biosynthesis I | 0.012723584 | plantCyc |
diacylglycerol and triacylglycerol biosynthesis | 0.012723584 | plantCyc |
regulation of auxin mediated signaling pathway | 0.012981097 | GO:0010928 |
leaf vascular tissue pattern formation | 0.013492362 | GO:0010305 |
cutin biosynthetic process | 0.013492362 | GO:0010143 |
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 0.013492362 | GO:0031146 |
peptidyl-histidine phosphorylation | 0.01469887 | GO:0018106 |
protein histidine kinase activity | 0.020902102 | GO:0004673 |
glycerol-3-phosphate 2-O-acyltransferase activity | 0.020902102 | GO:0090447 |
phosphatase activity | 0.024635553 | GO:0016791 |
Glycerolipid metabolism | 0.028087537 | KEGG pathway |
SCF ubiquitin ligase complex | 0.030336564 | GO:0019005 |
Transcription_related, Transcription factor: C2H2 | 0.041260108 | TF family |
polysaccharide binding | 0.04886595 | GO:0030247 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T010660 | AT1G25250 (9.00E-84) | AtIDD16|indeterminate(ID)-domain 16 |
CRO_T010920 | AT4G33160 (2.00E-22) | F-box family protein |
CRO_T014804 | AT1G26910 (3.00E-114) | RPL10B|ribosomal protein L10 B |
CRO_T024094 | AT4G13600 (8.00E-19) | Carbohydrate-binding X8 domain superfamily protein |
CRO_T026861 | AT1G01610 (0) | ATGPAT4|GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4 |
CRO_T031713 | - | - |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
TreatCFM001824 | formation of glycosidic bonds, GlycosylTransferases: GTnc oligosaccharide metabolic process sialylation protein N-linked glycosylation via asparagine sialyltransferase activity galactosyltransferase activity microtubule-based movement | details |
TreatCFM002007 | Transcription_related, Transcription factor: Alfin-like Transcription_related, Transcription factor: zf-HD Transcription_related, Transcription factor: TCP deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process regulation of cell cycle peptidyl-histidine phosphorylation protein histidine kinase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ribonucleoside-diphosphate reductase complex Purine metabolism multicellular organism development | details |
TreatCFM002076 | eukaryotic translation initiation factor 2B complex SCF ubiquitin ligase complex proteasome complex S-methyl-5-thioribose-1-phosphate isomerase activity myosin heavy chain kinase activity guanyl-nucleotide exchange factor activity simple leaf morphogenesis regulation of auxin mediated signaling pathway L-methionine biosynthetic process from methylthioadenosine SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Fanconi anemia pathway Proteasome regulation of translational initiation positive regulation of GTPase activity translational initiation RNA transport translation initiation factor activity 2-alkenal reductase [NAD(P)] activity | details |
Expression profiles
![]() Show details about module gene expression profiling |