TreatCFM002086's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome biogenesis in eukaryotes | 0.000850507 | KEGG pathway |
| argininosuccinate metabolic process | 0.009631669 | GO:0000053 |
| endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.009631669 | GO:0000480 |
| negative regulation of nucleic acid-templated transcription | 0.009631669 | GO:1903507 |
| urea cycle | 0.009631669 | plantCyc |
| argininosuccinate synthase activity | 0.010028097 | GO:0004055 |
| endoribonuclease activity | 0.010028097 | GO:0004521 |
| RNA-3'-phosphate cyclase activity | 0.010028097 | GO:0003963 |
| transcription corepressor activity | 0.011278609 | GO:0003714 |
| Ino80 complex | 0.015192223 | GO:0031011 |
| Pwp2p-containing subcomplex of 90S preribosome | 0.015192223 | GO:0034388 |
| cellular response to phosphate starvation | 0.015398381 | GO:0016036 |
| arginine biosynthetic process | 0.019232628 | GO:0006526 |
| snoRNA binding | 0.028523132 | GO:0030515 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.030162505 | GO:0000462 |
| Biosynthesis of amino acids | 0.041156279 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008557 | AT4G40050 (0) | Protein of unknown function (DUF3550/UPF0682) |
| CRO_T008722 | AT5G22100 (1.00E-135) | RNA cyclase family protein |
| CRO_T008794 | AT4G28300 (1.00E-21) | Protein of unknown function (DUF1421) |
| CRO_T011023 | AT1G03060 (2.00E-05) | SPI|SPIRRIG |
| CRO_T017425 | AT4G24830 (3.00E-50) | arginosuccinate synthase family |
| CRO_T019728 | AT3G45830 (0) | unknown protein |
| CRO_T025226 | AT2G03880 (3.00E-107) | REME1|required for efficiency of mitochondrial editing 1 |
| CRO_T027791 | AT4G28200 (0) | unknown protein |
| CRO_T031991 | AT2G47220 (5.00E-28) | ATDUF5|DOMAIN OF UNKNOWN FUNCTION 724 5 |
| CRO_T032144 | AT3G56680 (3.00E-49) | Single-stranded nucleic acid binding R3H protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001363 | Ubiquitin_Proteasome_system, E3 adaptor: DWD S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ethylene biosynthesis I (plants) anaphase-promoting complex binding methionine adenosyltransferase activity ubiquitin-protein transferase activator activity potassium ion transmembrane transporter activity NOD-like receptor signaling pathway oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | details |
| TreatCFM001501 | Wnt signaling pathway ruffle membrane Transcription_related, Transcription regulator: PHD negative regulation of nucleic acid-templated transcription regulation of ruffle assembly protein methylation protein methyltransferase activity transcription corepressor activity histone acetylation histone acetyltransferase activity transcription cofactor activity phosphatidylinositol binding | details |
| TreatCFM001639 | endoribonuclease activity RNA-3'-phosphate cyclase activity transcription corepressor activity endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) negative regulation of nucleic acid-templated transcription cellular response to phosphate starvation RNA polymerase II transcription cofactor activity autophagy Autophagy - animal Ribosome biogenesis in eukaryotes regulation of transcription from RNA polymerase II promoter mediator complex | details |
| TreatCFM001822 | Spliceosome mRNA splicing, via spliceosome regulation of histone H4 acetylation histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding DNA replication factor A complex Cul4-RING E3 ubiquitin ligase complex Prp19 complex NuA4 histone acetyltransferase complex regulation of gene expression regulation of transcription, DNA-templated regulation of flower development precatalytic spliceosome catalytic step 2 spliceosome RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001984 | RNA transport snoRNA binding translation initiation factor binding nucleocytoplasmic transporter activity floral organ development phyllome development mitotic spindle assembly checkpoint floral whorl development Ubiquitin_Proteasome_system, DUB: JAMM pollen germination eukaryotic translation initiation factor 3 complex, eIF3m Transcription_related, Transcription regulator: SET Pwp2p-containing subcomplex of 90S preribosome protein import into nucleus formation of translation preinitiation complex maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of translational initiation Ribosome biogenesis in eukaryotes eukaryotic 48S preinitiation complex cell part eukaryotic 43S preinitiation complex nuclear pore translation initiation factor activity small-subunit processome embryo development ending in seed dormancy | details |
Expression profiles
 Show details about module gene expression profiling |