TreatCFM002177's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| S-adenosyl-L-methionine cycle II | 0.005780111 | plantCyc |
| 2'-deoxymugineic acid phytosiderophore biosynthesis | 0.005780111 | plantCyc |
| L-methionine degradation I (to L-homocysteine) | 0.005780111 | plantCyc |
| L-methionine salvage cycle I (bacteria and plants) | 0.005780111 | plantCyc |
| L-methionine salvage cycle II (plants) | 0.005780111 | plantCyc |
| S-adenosyl-L-methionine biosynthesis | 0.005780111 | plantCyc |
| S-adenosylmethionine biosynthetic process | 0.005849767 | GO:0006556 |
| one-carbon metabolic process | 0.007307347 | GO:0006730 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.007798537 | cazy family |
| glycogen (starch) synthase activity | 0.007815683 | GO:0004373 |
| methionine adenosyltransferase activity | 0.007815683 | GO:0004478 |
| starch binding | 0.007815683 | GO:2001070 |
| cytoplasmic translation | 0.009084858 | GO:0002181 |
| ethylene biosynthesis I (plants) | 0.010586697 | plantCyc |
| starch biosynthesis | 0.010586697 | plantCyc |
| Transcription_related, Transcription regulator: SNF2 | 0.022357933 | TF family |
| metal ion binding | 0.024643403 | GO:0046872 |
| cytosolic large ribosomal subunit | 0.044939697 | GO:0022625 |
| Biosynthesis of amino acids | 0.049664992 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003368 | AT2G40770 (0) | zinc ion binding; DNA binding; helicases; ATP binding; nucleic acid binding |
| CRO_T008501 | AT3G01180 (1.00E-33) | AtSS2|starch synthase 2 |
| CRO_T013724 | AT1G59780 (2.00E-22) | NB-ARC domain-containing disease resistance protein |
| CRO_T024900 | AT1G58390 (8.00E-55) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T032664 | AT3G05560 (1.00E-41) | Ribosomal L22e protein family |
| CRO_T033465 | AT2G36880 (0) | MAT3|methionine adenosyltransferase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001444 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ribokinase activity methionine adenosyltransferase activity aminoacyl-tRNA ligase activity adenosine kinase activity tRNA aminoacylation for protein translation S-adenosylmethionine biosynthetic process D-ribose metabolic process AMP biosynthetic process ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) chloroplast Photosynthesis | details |
| TreatCFM001886 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis aminoacyl-tRNA ligase activity methionine adenosyltransferase activity ribokinase activity adenosine kinase activity nucleic acid binding AMP biosynthetic process D-ribose metabolic process S-adenosylmethionine biosynthetic process tRNA aminoacylation for protein translation ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation metal ion binding glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) single-organism cellular process chloroplast Photosynthesis | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
| TreatCFM002032 | sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glutamine N-phenylacetyltransferase activity glycogen (starch) synthase activity starch binding sucrose-phosphate synthase activity sucrose synthase activity starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II Plant-pathogen interaction Starch and sucrose metabolism | details |
| TreatCFM002135 | pyrimidine ribonucleosides salvage I Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase ATP binding SUMO activating enzyme activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity regulation of mitotic cell cycle protein sumoylation | details |
| TreatCFM002155 | Cytochrome_P450, Cytochrome P450: CYP73A Degradation of aromatic compounds trans-cinnamate 4-monooxygenase activity phenylpropanoid biosynthesis, initial reactions phenylalanine ammonia-lyase activity lignin metabolic process protein N-glycosylation (eukaryotic, high mannose) anion transport suberin monomers biosynthesis transmembrane transporter activity cysteine-type endopeptidase activity extracellular space Lysosome integral component of membrane vacuolar membrane | details |
| TreatCFM002161 | γ-glutamyl cycle protein targeting to membrane vesicle fusion biological regulation vesicle docking cytoplasmic translation peptidyl-tyrosine phosphorylation SNARE interactions in vesicular transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription regulator: SNF2 SNARE binding non-membrane spanning protein tyrosine kinase activity SNAP receptor activity | details |
| TreatCFM002165 | formation of glycosidic bonds, GlycosylTransferases: GTnc RNA splicing RNA modification acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002166 | mRNA pseudouridine synthesis tRNA wobble position uridine thiolation positive regulation of transcription from RNA polymerase I promoter t-UTP complex formation of glycosidic bonds, GlycosylTransferases: GTnc 90S preribosome sulfurtransferase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis starch biosynthesis starch binding glycogen (starch) synthase activity pseudouridine synthase activity snoRNA binding Transcription_related, Transcription factor: C3H Ribosome biogenesis in eukaryotes tRNA modification maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome | details |
| TreatCFM002174 | acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis DNA replication response to stress Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |