Solyc01g087400.2's detail annotation
Phytozome annotation
| RING/FYVE/PHD-type zinc finger family protein |
Network
Functional module
| Module ID | Function Annotation | Category |
|---|
| CFinderADM000464 | integrator_complex
transcription factor TFIIIB complex
retromer complex
protein_sumoylation
cellular response to extracellular stimulus
snRNA_processing
transcription initiation from RNA polymerase III promoter
retrograde transport, endosome to Golgi
RNA polyadenylation
lysine degradation II
MicroRNAs_in_cancer
| global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|
| Solyc01g087400.2 | SL2.40 | phytozomev10 | SL2.40ch01 | 74108628 | 74114909 | - |
Gene structure and chromatin state
Sequences
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|
| Solanum tuberosum | PGSC0003DMP400012022 | 1.00E-118 | MdSFBB3-alpha protein |
| Capsicum annuum | Capang01g002295 | 3.00E-162 | |
| Capsicum annuum | Capana01g002615 | 1.00E-162 | |
| Capsicum annuum | CA01g20760 | 4.00E-121 | Detected protein of unknown function |
| Nicotiana benthamiana(v1.01) | Niben101Scf11657g01001.1 | 3.00E-116 | PHD finger family protein LENGTH=779 |
| Solanum pennellii | Sopen01g034460.1 | 2.00E-149 | hypothetical protein |
| Petunia axillaris | Peaxi162Scf00953g00513.1 | 5.00E-106 | PHD finger family protein isoform 1 [Theobroma cacao] gb|EOX96661.1| PHD finger family protein isoform 1 [Theobroma cacao] |
| Petunia inflata | Peinf101Scf01005g02001.1 | 3.00E-108 | PHD finger family protein isoform 1 |
Gene family
KEGG pathway
| KO |
Enzyme |
Enzyme ID |
pathway |
mapID |
| - | - | - | - | - |
PlantCyC
| Enzyme ID |
Description |
Pathway |
Pathway id |
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|
| - | - | - |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|
| - | - | - | - |
Expression pattern