Solyc02g090230.2's detail annotation
Phytozome annotation
| hydroxyproline-rich glycoprotein family protein |
Network
Functional module
| Module ID | Function Annotation | Category |
|---|
| TissueCFM001015 | nuclear pore
structural_constituent_of_nuclear_pore
nucleocytoplasmic transport
microtubule organizing center
spindle pole
microtubule cytoskeleton organization
Transcription_related, Transcription factor: GRAS
| Tissue preferential network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|
| Solyc02g090230.2 | SL2.40 | phytozomev10 | SL2.40ch02 | 46429888 | 46437493 | + |
Gene structure and chromatin state
Sequences
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|
| Arabidopsis thaliana | AT4G37130 | 4.00E-131 | TRANSCURVATA 1 |
| Nicotiana tabacum | gene_75116 | 0 | Nucleoporin p58_p45 |
| Nicotiana tabacum | gene_34331 | 0 | Nucleoporin p58_p45 |
| Nicotiana tabacum | gene_2357 | 0 | Nucleoporin p58_p45 |
| Nicotiana tabacum | gene_71823 | 0 | Nucleoporin p58_p45 |
| Nicotiana tabacum | gene_73643 | 0 | Nucleoporin p58_p45 |
| Nicotiana tabacum | gene_1031 | 0 | Nucleoporin p58_p45 |
| Nicotiana benthamiana(v0.44) | NbS00028776g0007.1 | 3.00E-160 | Nucleoporin p58/p45 (AHRD V1 ***- B4FHB0_MAIZE) |
| Nicotiana benthamiana(v0.44) | NbS00018348g0007.1 | 8.00E-120 | Nucleoporin p58/p45 (AHRD V1 ***- B4FHB0_MAIZE) |
| Solanum tuberosum | PGSC0003DMP400017850 | 0 | Ubiquitin carboxyl-terminal hydrolase |
| Capsicum annuum | Capang02g002860 | 8E-174 | |
| Capsicum annuum | Capana02g003153 | 6.00E-174 | |
| Capsicum annuum | CA02g25970 | 2.00E-155 | Peroxidase A |
| Nicotiana benthamiana(v1.01) | Niben101Scf05087g02009.1 | 2.00E-171 | Nucleoporin p58/p45 |
| Nicotiana benthamiana(v1.01) | Niben101Scf00044g00020.1 | 2.00E-157 | Nucleoporin p58/p45 |
| Solanum pennellii | Sopen02g034920.1 | 0 | hypothetical protein |
| Petunia axillaris | Peaxi162Scf00993g00022.1 | 4.00E-163 | hydroxyproline-rich glycoprotein family protein |
| Petunia inflata | Peinf101Scf02242g00028.1 | 0 | hydroxyproline-rich glycoprotein family protein |
| Solanum melongena | Sme2.5_01191.1_g00007.1 | 0 | |
Gene family
KEGG pathway
PlantCyC
| Enzyme ID |
Description |
Pathway |
Pathway id |
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|
| - | - | - |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|
| - | - | - | - |
Expression pattern