Solyc03g007390.2's detail annotation
Phytozome annotation
| Pentatricopeptide repeat (PPR) superfamily protein |
Network
Functional module
| Module ID | Function Annotation | Category |
|---|
| CFinderADM000492 | Transcription regulator: SWI/SNF-SWI3
spermine and spermidine degradation III
beta-Alanine_metabolism
| global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|
| Solyc03g007390.2 | SL2.40 | phytozomev10 | SL2.40ch03 | 1934183 | 1937655 | + |
Gene structure and chromatin state
Sequences
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|
| Nicotiana tabacum | gene_83790 | 0 | Pentatricopeptide repeat-containing protein |
| Nicotiana tabacum | gene_65765 | 0 | Pentatricopeptide repeat-containing protein |
| Nicotiana tabacum | gene_61843 | 5.00E-16 | Pentatricopeptide repeat-containing protein |
| Nicotiana tabacum | gene_62222 | 4.00E-19 | Pentatricopeptide repeat-containing protein |
| Nicotiana tabacum | gene_64172 | 0 | Pentatricopeptide repeat-containing protein |
| Nicotiana tabacum | gene_64504 | 0 | Pentatricopeptide repeat-containing protein |
| Nicotiana benthamiana(v0.44) | NbS00025936g0001.1 | 5.00E-30 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY) |
| Nicotiana benthamiana(v0.44) | NbS00053364g0005.1 | 0 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY) |
| Nicotiana benthamiana(v0.44) | NbS00039584g0001.1 | 0 | Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY) |
| Solanum tuberosum | PGSC0003DMP400016024 | 0 | Gene of unknown function |
| Capsicum annuum | Capang03g001961 | 0 | |
| Capsicum annuum | Capana03g002071 | 0 | |
| Capsicum annuum | CA03g19210 | 0 | Pentatricopeptide repeat-containing protein, putative |
| Nicotiana benthamiana(v1.01) | Niben101Scf12148g01008.1 | 0 | Pentatricopeptide repeat-containing protein |
| Nicotiana benthamiana(v1.01) | Niben101Scf03565g05001.1 | 0 | Pentatricopeptide repeat-containing protein |
| Solanum pennellii | Sopen03g003350.1 | 0 | PPR repeat family |
| Petunia axillaris | Peaxi162Scf00566g00064.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| Petunia inflata | Peinf101Scf01591g00001.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| Petunia inflata | Peinf101Scf00257g00003.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Gene family
KEGG pathway
| KO |
Enzyme |
Enzyme ID |
pathway |
mapID |
| - | - | - | - | - |
PlantCyC
| Enzyme ID |
Description |
Pathway |
Pathway id |
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|
| - | - | - |
Pfam Domain
Expression pattern