Gene detail

Solyc04g008550.2's detail annotation

Phytozome annotation

	CCCH-type zinc finger family protein

CCCH-type zinc finger family protein

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
CFinderADM000494	retromer complex retrograde transport, endosome to Golgi microtubule protein transport microtubule-based process Transcription regulator: C3H Nicotinate_and_nicotinamide_metabolism	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc04g008550.2	SL2.40	phytozomev10	SL2.40ch04	2166940	2170876	-

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc04g008550.2
TTGTATCATTCTTGTATATGCTTGAAAACCCTAGATCCACTCTCAAAAGTTTCTTCTAGGATCTGTTTGTTAGGGTTAACAACAATCATGGTGGGTCCTACACCGCCGCAGAAGCTGCAAATTCAGCCGCCACCTTCTTCTACGCCGGCGGTAGCGCCTTCAGCTGAAGAAGAAGCTCTCAAGAGAAACACTGATTGTGTCTACTTTCTAGCTTCTCCTCTTACATGCAAGAAGGTTCAACTCTATTTCATTTTCTTTTTTGGGTTTAATTTGATTTGTAAATGATTATCAATTCGTTGAGATTATGATTGTAGTGCTCCTTATAGTGTGAGATTTAGAGATTAATTGGGATTAAGATTTGATTTTTATTAGTTTGTGTAGAGGTTTGTATGTTAATTAGCAAGATTTAGAGGATTTCTTGGTTTTTGGGATCCAATATTTAATCTTTTAAGAGATGGGCAGTGGAATTGATATAAAAGGTTTGGTATAGCTGATCTTAACTAGTTTGGGATTGAGATGTAGTTGTACTTTTGTAGTTGTTGATTTGATTTGAAAAGATTGTTGTATGGATGAATTAGTTGAAGATCTGTGTTTAAATGGGTGGCCATTTTTTGCTTTCTAATCCAAGGTGATTTCTTTGTGTTTTTTGGAACTTGATCTACTTATGTTTTTAGCTATGGGTGAACACTAGTGATATGGAAGCTGGGGTTTTTCATTTGGTGATTGGATAGCGTCTGTCCGATGCTTGATTCTGAATTTCTTGTTCCTTTTTTGTTGCTTGTGTTATCAGATTAAAGGAAGTATCTTTTTTTTTGTCGGATTGTAAATGAATTACTCGCGATTGTCTATGTGAGAAGCCATTGCCCTATCTAGAAGTTTTAACTTATCTAGAAGTCTTCAAGTTACAGCATGTTGTTGTTTGTTGCCCCTGTGTTTTTGTCGTTCTTGGGAACGGTTAGGTTCTTGCTATTTTTTGTTTTGATACATCCACTCTTGTAGCTTGTTGATTTGTTTTTTTGATTTGAAATGTGTATCAAGATTTTATTTTTTTGACTTATATGATGATTTTGTGATACATACTGGACTGAGAGTAATCTCGGAGCAAGTATAAAGTCAGTTACTAGGATGTGGAGAATAAGTGTGCAGCTGAATGACTGTCCGTGTATAATTATTAGCAATTACATTAGTCGTTTTTGCATCTGAATTGTCGTTTGCTTTGGTCGGATCATGTGAGACAGTAATATGGCAGTAACTGAATTTATTTGTCTTTTGTAAGCAAAGAGGAAATGACAAATGTTACAAAACCAGTTGGCATCATGCTTTTACGTTATCAATTTCTCTGTGTGTGAATGAATACAAACGTGATTGGCTTCGTCGTAATAGGGATAATGTTCTAGATGATTCAATCCTCGTCTTTGTTCTATAGTATTTACCGACGCTCTAGTTATTTTTATTTTGTCCACAGGGAAGCGAGTGTGAGTACCGTCATAGTGACGTTGCTCGGCTTAATCCTCGAGACTGCTATTACTGGTTGAACGGAAGCTGCTTAAACCCAAAATGCGCATTCCGGCATCCTGTGAGTCATTCTTCACTAACATACTACACAATCTTATCATCTATGTGCTATAGTACCAAGGGTTCCTTGTCGTGATGTGAACTTACTTATTTTCTTTTACTAGCGAACCAGGAGTGCTCTGTGTCTGTAAACTAATTATTGACATGATAGTTAATAATCTTCTACTTTTGCAGCCTCTTGATGGACTTTTGGGAGCTCAAGTTACAACTCCTAAAGGATCTTCTGCACCACCAGTGGCATCTGTTGCACCTACGCCGAATGTTCCATATGGTTCTAGCAAGCAAGGTGTACCATGTATTTTCTTCCAGCAAGGGTTTTGTTTAAAAGGTGATAGGTGTCCATTCTTCCATGCACCATTGTTTGGGTCTAACAAAGCTCCTCCACATCCTGTATCTACTGCATCTGCATCTACTGAGAAAACCAATTTTAAGGCATTTGGTGGGCTTGAAAAGTGTGTGCAAGAGAAAACATTTTTTCAAACAAATATTTGGAAGTCTGGTGAATTATCTGTACAAGCACAACCAGTTGAGAAACTGAAAACTCCTTTGCCCAAGAATAATGCTGTCTTTAATGGGAATGTGCTGCCATCCACTCCTGTCATTGATGTTGCGCATAACAGGCACAAACCAAAAAGTGTGCCGCCTCCAAATGGGAATCCTGTCGGTAGATCCAACAGAGTGCAACAGTCTGCTAGGTTTGATGATCACAGTAACTTTCAGAACAAAGATGATGAGATTTCAAGGGAGCTTTCACCTGGTTTTGATGTTCTTGTGGATGATGAGCTCAGAGGTACTGATTTTTATCATGGTGAAGGTCGATATGGCAGAAATGGGGGAAGGAATGAATATGATATTGTTCGCTCTGCTGATTATACTTCAGTTGCAGATGTGGACCAAGATATGTACCATGATGGCTATGGGCACGACTCTCACGACAGGCTTCCGGGTCGATCTGGTAGGGTGCAGCATAGAACTTCTTCTGAGAGAGTACAAGGGGAATCCGCCCATCTTGAAAGGAGACGCTATGGTAGAGCTCACAGCCCTGAAGATGTTCGAGAGTCTGATCTGAGGCATCGTTTATCAAAGCATAACAGAGTTAATGGTTTGAGGTCAGTCATTAGTCAGGACTATGCAAGTGAAAAGCATGTTGAGGATCGAGGCTACCGAAGTTCCAGGAGGGATCGACCCTATGTACCTTCACATGATAGTTCCCTTGCTAGTCGTCTTCGAGGAAGAATAAAGCTACCAAGTAGATCACCCTCTCCAACTAATGGGACAGACATGCGGCTGGATAGGGCTAGGGACCGTGGCAGGTTATCTTCAGAAAGGCCACAGCTTTTCTCTCAACAGGGAAGGCTTCGCGATAGAATTAAGGGAAGAGTGCAAGAGGATCTCAATGATTCTGGAAGAAATAACAGTGGTCCACGTATAAGAAGAGATGTAAGCGAGAATGATTCAAATTTTTCTGGTCCAAGAAGTCTTGCTGAACTTAAAGGTCGGAAAACTGCTGAGACCAATGAACAAAATATTGACGAGCAACAGGCCCTAGGGAAGCGTAAGTTCCAAAAGCGTGATGACTATCAGCAAACAGGAGGAGATAATATATCATTTGATGGACCAATGCCTCTGCAAGAGATCTTGAAGAGAAAAAGAAACAGTAAAACAGGCATGACATCTGATAAGAGTGAAGATCATCAACATGAAAGAAACGACCACGCTCTGCCAGTGGTGACGTCCTCCATCTCCAGGAACAATACTGACTTTGAGCAAAAGGAAGAGTCTGATCCTCCATCTGGTGTATTAGCTGATCATAAATCTCCTGCTCACCATGTTGCAAATGAACTTGAAGCTGAAGAAGGGATGATTATGGAAGAAGCAGACGATCAAGACCCTGAAGCTGAAGGTCATGATCAAAGAGATGGAGACTATGATTATGAGCAGGTTGATGGTGAAGATTACAATTTAGACGAAGGTGAGAATATTGACGCTGGTGAAGAATACCTGGATGAGGATGATGATGAAGATGAATTTGCTAAGAAGATGGGTGTTGTTTTCTCATAAATGATGGGATACATCACTCGCTCTAGGCTATTTTAGGTTGGCTCGGAATGAGCAAATTCAACTGCTCTACTGATTTTTATCCTTTAGAAGTAGAGAAAACACTCTTTTTCTTCGTTGTATTTATACTCGGAGACTGGCTGGAAAATTTTCCACCGGTTTGTGGCATTTGGCAGATCTATAGTTTTGCCAAAGATGGTGTTGACTGTAACATTAGAGGGTTAATAAGAAACACGTTTGCTAGTGTATTTTTTCTATAGATTTACAACTTCTTCTCCATATATACCTGAGTTGGAAGTTTAAA
Transcript:
Solyc04g008550.2.1
TTGTATCATTCTTGTATATGCTTGAAAACCCTAGATCCACTCTCAAAAGTTTCTTCTAGGATCTGTTTGTTAGGGTTAACAACAATCATGGTGGGTCCTACACCGCCGCAGAAGCTGCAAATTCAGCCGCCACCTTCTTCTACGCCGGCGGTAGCGCCTTCAGCTGAAGAAGAAGCTCTCAAGAGAAACACTGATTGTGTCTACTTTCTAGCTTCTCCTCTTACATGCAAGAAGGGAAGCGAGTGTGAGTACCGTCATAGTGACGTTGCTCGGCTTAATCCTCGAGACTGCTATTACTGGTTGAACGGAAGCTGCTTAAACCCAAAATGCGCATTCCGGCATCCTCCTCTTGATGGACTTTTGGGAGCTCAAGTTACAACTCCTAAAGGATCTTCTGCACCACCAGTGGCATCTGTTGCACCTACGCCGAATGTTCCATATGGTTCTAGCAAGCAAGGTGTACCATGTATTTTCTTCCAGCAAGGGTTTTGTTTAAAAGGTGATAGGTGTCCATTCTTCCATGCACCATTGTTTGGGTCTAACAAAGCTCCTCCACATCCTGTATCTACTGCATCTGCATCTACTGAGAAAACCAATTTTAAGGCATTTGGTGGGCTTGAAAAGTGTGTGCAAGAGAAAACATTTTTTCAAACAAATATTTGGAAGTCTGGTGAATTATCTGTACAAGCACAACCAGTTGAGAAACTGAAAACTCCTTTGCCCAAGAATAATGCTGTCTTTAATGGGAATGTGCTGCCATCCACTCCTGTCATTGATGTTGCGCATAACAGGCACAAACCAAAAAGTGTGCCGCCTCCAAATGGGAATCCTGTCGGTAGATCCAACAGAGTGCAACAGTCTGCTAGGTTTGATGATCACAGTAACTTTCAGAACAAAGATGATGAGATTTCAAGGGAGCTTTCACCTGGTTTTGATGTTCTTGTGGATGATGAGCTCAGAGTTGCAGATGTGGACCAAGATATGTACCATGATGGCTATGGGCACGACTCTCACGACAGGCTTCCGGGTCGATCTGGTAGGGTGCAGCATAGAACTTCTTCTGAGAGAGTACAAGGGGAATCCGCCCATCTTGAAAGGAGACGCTATGGTAGAGCTCACAGCCCTGAAGATGTTCGAGAGTCTGATCTGAGGCATCGTTTATCAAAGCATAACAGAGTTAATGGTTTGAGGTCAGTCATTAGTCAGGACTATGCAAGTGAAAAGCATGTTGAGGATCGAGGCTACCGAAGTTCCAGGAGGGATCGACCCTATGTACCTTCACATGATAGTTCCCTTGCTAGTCGTCTTCGAGGAAGAATAAAGCTACCAAGTAGATCACCCTCTCCAACTAATGGGACAGACATGCGGCTGGATAGGGCTAGGGACCGTGGCAGGTTATCTTCAGAAAGGCCACAGCTTTTCTCTCAACAGGGAAGGCTTCGCGATAGAATTAAGGGAAGAGTGCAAGAGGATCTCAATGATTCTGGAAGAAATAACAGTGGTCCACGTATAAGAAGAGATGTAAGCGAGAATGATTCAAATTTTTCTGGTCCAAGAAGTCTTGCTGAACTTAAAGGTCGGAAAACTGCTGAGACCAATGAACAAAATATTGACGAGCAACAGGCCCTAGGGAAGCGTAAGTTCCAAAAGCGTGATGACTATCAGCAAACAGGAGGAGATAATATATCATTTGATGGACCAATGCCTCTGCAAGAGATCTTGAAGAGAAAAAGAAACAGTAAAACAGGCATGACATCTGATAAGAGTGAAGATCATCAACATGAAAGAAACGACCACGCTCTGCCAGTGGTGACGTCCTCCATCTCCAGGAACAATACTGACTTTGAGCAAAAGGAAGAGTCTGATCCTCCATCTGGTGTATTAGCTGATCATAAATCTCCTGCTCACCATGTTGCAAATGAACTTGAAGCTGAAGAAGGGATGATTATGGAAGAAGCAGACGATCAAGACCCTGAAGCTGAAGGTCATGATCAAAGAGATGGAGACTATGATTATGAGCAGGTTGATGGTGAAGATTACAATTTAGACGAAGGTGAGAATATTGACGCTGGTGAAGAATACCTGGATGAGGATGATGATGAAGATGAATTTGCTAAGAAGATGGGTGTTGTTTTCTCATAAATGATGGGATACATCACTCGCTCTAGGCTATTTTAGGTTGGCTCGGAATGAGCAAATTCAACTGCTCTACTGATTTTTATCCTTTAGAAGTAGAGAAAACACTCTTTTTCTTCGTTGTATTTATACTCGGAGACTGGCTGGAAAATTTTCCACCGGTTTGTGGCATTTGGCAGATCTATAGTTTTGCCAAAGATGGTGTTGACTGTAACATTAGAGGGTTAATAAGAAACACGTTTGCTAGTGTATTTTTTCTATAGATTTACAACTTCTTCTCCATATATACCTGAGTTGGAAGTTTAAA
CDS:
Solyc04g008550.2.1
ATGGTGGGTCCTACACCGCCGCAGAAGCTGCAAATTCAGCCGCCACCTTCTTCTACGCCGGCGGTAGCGCCTTCAGCTGAAGAAGAAGCTCTCAAGAGAAACACTGATTGTGTCTACTTTCTAGCTTCTCCTCTTACATGCAAGAAGGGAAGCGAGTGTGAGTACCGTCATAGTGACGTTGCTCGGCTTAATCCTCGAGACTGCTATTACTGGTTGAACGGAAGCTGCTTAAACCCAAAATGCGCATTCCGGCATCCTCCTCTTGATGGACTTTTGGGAGCTCAAGTTACAACTCCTAAAGGATCTTCTGCACCACCAGTGGCATCTGTTGCACCTACGCCGAATGTTCCATATGGTTCTAGCAAGCAAGGTGTACCATGTATTTTCTTCCAGCAAGGGTTTTGTTTAAAAGGTGATAGGTGTCCATTCTTCCATGCACCATTGTTTGGGTCTAACAAAGCTCCTCCACATCCTGTATCTACTGCATCTGCATCTACTGAGAAAACCAATTTTAAGGCATTTGGTGGGCTTGAAAAGTGTGTGCAAGAGAAAACATTTTTTCAAACAAATATTTGGAAGTCTGGTGAATTATCTGTACAAGCACAACCAGTTGAGAAACTGAAAACTCCTTTGCCCAAGAATAATGCTGTCTTTAATGGGAATGTGCTGCCATCCACTCCTGTCATTGATGTTGCGCATAACAGGCACAAACCAAAAAGTGTGCCGCCTCCAAATGGGAATCCTGTCGGTAGATCCAACAGAGTGCAACAGTCTGCTAGGTTTGATGATCACAGTAACTTTCAGAACAAAGATGATGAGATTTCAAGGGAGCTTTCACCTGGTTTTGATGTTCTTGTGGATGATGAGCTCAGAGTTGCAGATGTGGACCAAGATATGTACCATGATGGCTATGGGCACGACTCTCACGACAGGCTTCCGGGTCGATCTGGTAGGGTGCAGCATAGAACTTCTTCTGAGAGAGTACAAGGGGAATCCGCCCATCTTGAAAGGAGACGCTATGGTAGAGCTCACAGCCCTGAAGATGTTCGAGAGTCTGATCTGAGGCATCGTTTATCAAAGCATAACAGAGTTAATGGTTTGAGGTCAGTCATTAGTCAGGACTATGCAAGTGAAAAGCATGTTGAGGATCGAGGCTACCGAAGTTCCAGGAGGGATCGACCCTATGTACCTTCACATGATAGTTCCCTTGCTAGTCGTCTTCGAGGAAGAATAAAGCTACCAAGTAGATCACCCTCTCCAACTAATGGGACAGACATGCGGCTGGATAGGGCTAGGGACCGTGGCAGGTTATCTTCAGAAAGGCCACAGCTTTTCTCTCAACAGGGAAGGCTTCGCGATAGAATTAAGGGAAGAGTGCAAGAGGATCTCAATGATTCTGGAAGAAATAACAGTGGTCCACGTATAAGAAGAGATGTAAGCGAGAATGATTCAAATTTTTCTGGTCCAAGAAGTCTTGCTGAACTTAAAGGTCGGAAAACTGCTGAGACCAATGAACAAAATATTGACGAGCAACAGGCCCTAGGGAAGCGTAAGTTCCAAAAGCGTGATGACTATCAGCAAACAGGAGGAGATAATATATCATTTGATGGACCAATGCCTCTGCAAGAGATCTTGAAGAGAAAAAGAAACAGTAAAACAGGCATGACATCTGATAAGAGTGAAGATCATCAACATGAAAGAAACGACCACGCTCTGCCAGTGGTGACGTCCTCCATCTCCAGGAACAATACTGACTTTGAGCAAAAGGAAGAGTCTGATCCTCCATCTGGTGTATTAGCTGATCATAAATCTCCTGCTCACCATGTTGCAAATGAACTTGAAGCTGAAGAAGGGATGATTATGGAAGAAGCAGACGATCAAGACCCTGAAGCTGAAGGTCATGATCAAAGAGATGGAGACTATGATTATGAGCAGGTTGATGGTGAAGATTACAATTTAGACGAAGGTGAGAATATTGACGCTGGTGAAGAATACCTGGATGAGGATGATGATGAAGATGAATTTGCTAAGAAGATGGGTGTTGTTTTCTCATAA
Protein:
Solyc04g008550.2.1
MVGPTPPQKLQIQPPPSSTPAVAPSAEEEALKRNTDCVYFLASPLTCKKGSECEYRHSDVARLNPRDCYYWLNGSCLNPKCAFRHPPLDGLLGAQVTTPKGSSAPPVASVAPTPNVPYGSSKQGVPCIFFQQGFCLKGDRCPFFHAPLFGSNKAPPHPVSTASASTEKTNFKAFGGLEKCVQEKTFFQTNIWKSGELSVQAQPVEKLKTPLPKNNAVFNGNVLPSTPVIDVAHNRHKPKSVPPPNGNPVGRSNRVQQSARFDDHSNFQNKDDEISRELSPGFDVLVDDELRVADVDQDMYHDGYGHDSHDRLPGRSGRVQHRTSSERVQGESAHLERRRYGRAHSPEDVRESDLRHRLSKHNRVNGLRSVISQDYASEKHVEDRGYRSSRRDRPYVPSHDSSLASRLRGRIKLPSRSPSPTNGTDMRLDRARDRGRLSSERPQLFSQQGRLRDRIKGRVQEDLNDSGRNNSGPRIRRDVSENDSNFSGPRSLAELKGRKTAETNEQNIDEQQALGKRKFQKRDDYQQTGGDNISFDGPMPLQEILKRKRNSKTGMTSDKSEDHQHERNDHALPVVTSSISRNNTDFEQKEESDPPSGVLADHKSPAHHVANELEAEEGMIMEEADDQDPEAEGHDQRDGDYDYEQVDGEDYNLDEGENIDAGEEYLDEDDDEDEFAKKMGVVFS*

Gene:

>Solyc04g008550.2

TTGTATCATTCTTGTATATGCTTGAAAACCCTAGATCCACTCTCAAAAGTTTCTTCTAGGATCTGTTTGTTAGGGTTAACAACAATCATGGTGGGTCCTACACCGCCGCAGAAGCTGCAAATTCAGCCGCCACCTTCTTCTACGCCGGCGGTAGCGCCTTCAGCTGAAGAAGAAGCTCTCAAGAGAAACACTGATTGTGTCTACTTTCTAGCTTCTCCTCTTACATGCAAGAAGGTTCAACTCTATTTCATTTTCTTTTTTGGGTTTAATTTGATTTGTAAATGATTATCAATTCGTTGAGATTATGATTGTAGTGCTCCTTATAGTGTGAGATTTAGAGATTAATTGGGATTAAGATTTGATTTTTATTAGTTTGTGTAGAGGTTTGTATGTTAATTAGCAAGATTTAGAGGATTTCTTGGTTTTTGGGATCCAATATTTAATCTTTTAAGAGATGGGCAGTGGAATTGATATAAAAGGTTTGGTATAGCTGATCTTAACTAGTTTGGGATTGAGATGTAGTTGTACTTTTGTAGTTGTTGATTTGATTTGAAAAGATTGTTGTATGGATGAATTAGTTGAAGATCTGTGTTTAAATGGGTGGCCATTTTTTGCTTTCTAATCCAAGGTGATTTCTTTGTGTTTTTTGGAACTTGATCTACTTATGTTTTTAGCTATGGGTGAACACTAGTGATATGGAAGCTGGGGTTTTTCATTTGGTGATTGGATAGCGTCTGTCCGATGCTTGATTCTGAATTTCTTGTTCCTTTTTTGTTGCTTGTGTTATCAGATTAAAGGAAGTATCTTTTTTTTTGTCGGATTGTAAATGAATTACTCGCGATTGTCTATGTGAGAAGCCATTGCCCTATCTAGAAGTTTTAACTTATCTAGAAGTCTTCAAGTTACAGCATGTTGTTGTTTGTTGCCCCTGTGTTTTTGTCGTTCTTGGGAACGGTTAGGTTCTTGCTATTTTTTGTTTTGATACATCCACTCTTGTAGCTTGTTGATTTGTTTTTTTGATTTGAAATGTGTATCAAGATTTTATTTTTTTGACTTATATGATGATTTTGTGATACATACTGGACTGAGAGTAATCTCGGAGCAAGTATAAAGTCAGTTACTAGGATGTGGAGAATAAGTGTGCAGCTGAATGACTGTCCGTGTATAATTATTAGCAATTACATTAGTCGTTTTTGCATCTGAATTGTCGTTTGCTTTGGTCGGATCATGTGAGACAGTAATATGGCAGTAACTGAATTTATTTGTCTTTTGTAAGCAAAGAGGAAATGACAAATGTTACAAAACCAGTTGGCATCATGCTTTTACGTTATCAATTTCTCTGTGTGTGAATGAATACAAACGTGATTGGCTTCGTCGTAATAGGGATAATGTTCTAGATGATTCAATCCTCGTCTTTGTTCTATAGTATTTACCGACGCTCTAGTTATTTTTATTTTGTCCACAGGGAAGCGAGTGTGAGTACCGTCATAGTGACGTTGCTCGGCTTAATCCTCGAGACTGCTATTACTGGTTGAACGGAAGCTGCTTAAACCCAAAATGCGCATTCCGGCATCCTGTGAGTCATTCTTCACTAACATACTACACAATCTTATCATCTATGTGCTATAGTACCAAGGGTTCCTTGTCGTGATGTGAACTTACTTATTTTCTTTTACTAGCGAACCAGGAGTGCTCTGTGTCTGTAAACTAATTATTGACATGATAGTTAATAATCTTCTACTTTTGCAGCCTCTTGATGGACTTTTGGGAGCTCAAGTTACAACTCCTAAAGGATCTTCTGCACCACCAGTGGCATCTGTTGCACCTACGCCGAATGTTCCATATGGTTCTAGCAAGCAAGGTGTACCATGTATTTTCTTCCAGCAAGGGTTTTGTTTAAAAGGTGATAGGTGTCCATTCTTCCATGCACCATTGTTTGGGTCTAACAAAGCTCCTCCACATCCTGTATCTACTGCATCTGCATCTACTGAGAAAACCAATTTTAAGGCATTTGGTGGGCTTGAAAAGTGTGTGCAAGAGAAAACATTTTTTCAAACAAATATTTGGAAGTCTGGTGAATTATCTGTACAAGCACAACCAGTTGAGAAACTGAAAACTCCTTTGCCCAAGAATAATGCTGTCTTTAATGGGAATGTGCTGCCATCCACTCCTGTCATTGATGTTGCGCATAACAGGCACAAACCAAAAAGTGTGCCGCCTCCAAATGGGAATCCTGTCGGTAGATCCAACAGAGTGCAACAGTCTGCTAGGTTTGATGATCACAGTAACTTTCAGAACAAAGATGATGAGATTTCAAGGGAGCTTTCACCTGGTTTTGATGTTCTTGTGGATGATGAGCTCAGAGGTACTGATTTTTATCATGGTGAAGGTCGATATGGCAGAAATGGGGGAAGGAATGAATATGATATTGTTCGCTCTGCTGATTATACTTCAGTTGCAGATGTGGACCAAGATATGTACCATGATGGCTATGGGCACGACTCTCACGACAGGCTTCCGGGTCGATCTGGTAGGGTGCAGCATAGAACTTCTTCTGAGAGAGTACAAGGGGAATCCGCCCATCTTGAAAGGAGACGCTATGGTAGAGCTCACAGCCCTGAAGATGTTCGAGAGTCTGATCTGAGGCATCGTTTATCAAAGCATAACAGAGTTAATGGTTTGAGGTCAGTCATTAGTCAGGACTATGCAAGTGAAAAGCATGTTGAGGATCGAGGCTACCGAAGTTCCAGGAGGGATCGACCCTATGTACCTTCACATGATAGTTCCCTTGCTAGTCGTCTTCGAGGAAGAATAAAGCTACCAAGTAGATCACCCTCTCCAACTAATGGGACAGACATGCGGCTGGATAGGGCTAGGGACCGTGGCAGGTTATCTTCAGAAAGGCCACAGCTTTTCTCTCAACAGGGAAGGCTTCGCGATAGAATTAAGGGAAGAGTGCAAGAGGATCTCAATGATTCTGGAAGAAATAACAGTGGTCCACGTATAAGAAGAGATGTAAGCGAGAATGATTCAAATTTTTCTGGTCCAAGAAGTCTTGCTGAACTTAAAGGTCGGAAAACTGCTGAGACCAATGAACAAAATATTGACGAGCAACAGGCCCTAGGGAAGCGTAAGTTCCAAAAGCGTGATGACTATCAGCAAACAGGAGGAGATAATATATCATTTGATGGACCAATGCCTCTGCAAGAGATCTTGAAGAGAAAAAGAAACAGTAAAACAGGCATGACATCTGATAAGAGTGAAGATCATCAACATGAAAGAAACGACCACGCTCTGCCAGTGGTGACGTCCTCCATCTCCAGGAACAATACTGACTTTGAGCAAAAGGAAGAGTCTGATCCTCCATCTGGTGTATTAGCTGATCATAAATCTCCTGCTCACCATGTTGCAAATGAACTTGAAGCTGAAGAAGGGATGATTATGGAAGAAGCAGACGATCAAGACCCTGAAGCTGAAGGTCATGATCAAAGAGATGGAGACTATGATTATGAGCAGGTTGATGGTGAAGATTACAATTTAGACGAAGGTGAGAATATTGACGCTGGTGAAGAATACCTGGATGAGGATGATGATGAAGATGAATTTGCTAAGAAGATGGGTGTTGTTTTCTCATAAATGATGGGATACATCACTCGCTCTAGGCTATTTTAGGTTGGCTCGGAATGAGCAAATTCAACTGCTCTACTGATTTTTATCCTTTAGAAGTAGAGAAAACACTCTTTTTCTTCGTTGTATTTATACTCGGAGACTGGCTGGAAAATTTTCCACCGGTTTGTGGCATTTGGCAGATCTATAGTTTTGCCAAAGATGGTGTTGACTGTAACATTAGAGGGTTAATAAGAAACACGTTTGCTAGTGTATTTTTTCTATAGATTTACAACTTCTTCTCCATATATACCTGAGTTGGAAGTTTAAA

Transcript:

Solyc04g008550.2.1

CDS:

Solyc04g008550.2.1

ATGGTGGGTCCTACACCGCCGCAGAAGCTGCAAATTCAGCCGCCACCTTCTTCTACGCCGGCGGTAGCGCCTTCAGCTGAAGAAGAAGCTCTCAAGAGAAACACTGATTGTGTCTACTTTCTAGCTTCTCCTCTTACATGCAAGAAGGGAAGCGAGTGTGAGTACCGTCATAGTGACGTTGCTCGGCTTAATCCTCGAGACTGCTATTACTGGTTGAACGGAAGCTGCTTAAACCCAAAATGCGCATTCCGGCATCCTCCTCTTGATGGACTTTTGGGAGCTCAAGTTACAACTCCTAAAGGATCTTCTGCACCACCAGTGGCATCTGTTGCACCTACGCCGAATGTTCCATATGGTTCTAGCAAGCAAGGTGTACCATGTATTTTCTTCCAGCAAGGGTTTTGTTTAAAAGGTGATAGGTGTCCATTCTTCCATGCACCATTGTTTGGGTCTAACAAAGCTCCTCCACATCCTGTATCTACTGCATCTGCATCTACTGAGAAAACCAATTTTAAGGCATTTGGTGGGCTTGAAAAGTGTGTGCAAGAGAAAACATTTTTTCAAACAAATATTTGGAAGTCTGGTGAATTATCTGTACAAGCACAACCAGTTGAGAAACTGAAAACTCCTTTGCCCAAGAATAATGCTGTCTTTAATGGGAATGTGCTGCCATCCACTCCTGTCATTGATGTTGCGCATAACAGGCACAAACCAAAAAGTGTGCCGCCTCCAAATGGGAATCCTGTCGGTAGATCCAACAGAGTGCAACAGTCTGCTAGGTTTGATGATCACAGTAACTTTCAGAACAAAGATGATGAGATTTCAAGGGAGCTTTCACCTGGTTTTGATGTTCTTGTGGATGATGAGCTCAGAGTTGCAGATGTGGACCAAGATATGTACCATGATGGCTATGGGCACGACTCTCACGACAGGCTTCCGGGTCGATCTGGTAGGGTGCAGCATAGAACTTCTTCTGAGAGAGTACAAGGGGAATCCGCCCATCTTGAAAGGAGACGCTATGGTAGAGCTCACAGCCCTGAAGATGTTCGAGAGTCTGATCTGAGGCATCGTTTATCAAAGCATAACAGAGTTAATGGTTTGAGGTCAGTCATTAGTCAGGACTATGCAAGTGAAAAGCATGTTGAGGATCGAGGCTACCGAAGTTCCAGGAGGGATCGACCCTATGTACCTTCACATGATAGTTCCCTTGCTAGTCGTCTTCGAGGAAGAATAAAGCTACCAAGTAGATCACCCTCTCCAACTAATGGGACAGACATGCGGCTGGATAGGGCTAGGGACCGTGGCAGGTTATCTTCAGAAAGGCCACAGCTTTTCTCTCAACAGGGAAGGCTTCGCGATAGAATTAAGGGAAGAGTGCAAGAGGATCTCAATGATTCTGGAAGAAATAACAGTGGTCCACGTATAAGAAGAGATGTAAGCGAGAATGATTCAAATTTTTCTGGTCCAAGAAGTCTTGCTGAACTTAAAGGTCGGAAAACTGCTGAGACCAATGAACAAAATATTGACGAGCAACAGGCCCTAGGGAAGCGTAAGTTCCAAAAGCGTGATGACTATCAGCAAACAGGAGGAGATAATATATCATTTGATGGACCAATGCCTCTGCAAGAGATCTTGAAGAGAAAAAGAAACAGTAAAACAGGCATGACATCTGATAAGAGTGAAGATCATCAACATGAAAGAAACGACCACGCTCTGCCAGTGGTGACGTCCTCCATCTCCAGGAACAATACTGACTTTGAGCAAAAGGAAGAGTCTGATCCTCCATCTGGTGTATTAGCTGATCATAAATCTCCTGCTCACCATGTTGCAAATGAACTTGAAGCTGAAGAAGGGATGATTATGGAAGAAGCAGACGATCAAGACCCTGAAGCTGAAGGTCATGATCAAAGAGATGGAGACTATGATTATGAGCAGGTTGATGGTGAAGATTACAATTTAGACGAAGGTGAGAATATTGACGCTGGTGAAGAATACCTGGATGAGGATGATGATGAAGATGAATTTGCTAAGAAGATGGGTGTTGTTTTCTCATAA

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_31049	0	Zinc finger CCCH domain-containing protein 17
Nicotiana tabacum	gene_42750	0	Zinc finger CCCH domain-containing protein 17
Nicotiana tabacum	gene_29518	0	Zinc finger CCCH domain-containing protein 17
Nicotiana tabacum	gene_41386	0	Zinc finger CCCH domain-containing protein 17
Nicotiana tabacum	gene_41925	0	Zinc finger CCCH domain-containing protein 17
Nicotiana tabacum	gene_30977	0	Zinc finger CCCH domain-containing protein 17
Nicotiana benthamiana(v0.44)	NbS00035018g0003.1	0	Zinc finger CCCH domain-containing protein 17 (AHRD V1 ***- C3H17_ARATH)
Nicotiana benthamiana(v0.44)	NbS00034068g0005.1	0	Zinc finger CCCH domain-containing protein 17 (AHRD V1 ***- C3H17_ARATH)
Solanum tuberosum	PGSC0003DMP400028655	0	Gene of unknown function
Solanum tuberosum	PGSC0003DMP400028654	1.00E-166	Conserved gene of unknown function
Capsicum annuum	Capang05g000632	0
Capsicum annuum	Capang08g000072	1E-138
Capsicum annuum	Capana05g000746	0
Capsicum annuum	Capana08g000074	1.00E-138
Capsicum annuum	CA05g06640	0	CCCH-type zinc finger family protein, putative [Theobroma cacao]
Capsicum annuum	CA08g01000	2.00E-138	PREDICTED: zinc finger CCCH domain-containing protein 17-like [Solanum lycopersicum]
Nicotiana benthamiana(v1.01)	Niben101Scf02549g03010.1	0	Zinc finger CCCH domain-containing protein 17
Nicotiana benthamiana(v1.01)	Niben101Scf08519g03001.1	0	Zinc finger CCCH domain-containing protein 17
Nicotiana benthamiana(v1.01)	Niben101Scf08445g02019.1	0	Zinc finger CCCH domain-containing protein 17
Solanum pennellii	Sopen04g003710.1	0	hypothetical protein
Solanum pennellii	Sopen01g003710.1	0	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Petunia axillaris	Peaxi162Scf00329g00939.1	0	Zinc finger CCCH domain-containing protein 17
Petunia axillaris	Peaxi162Scf00097g01810.1	0	Zinc finger CCCH domain-containing protein 17
Petunia axillaris	Peaxi162Scf00984g00118.1	1.00E-38	Zinc finger CCCH domain-containing protein 34
Petunia inflata	Peinf101Scf01368g06029.1	0	Zinc finger CCCH domain-containing protein 17
Petunia inflata	Peinf101Scf00254g05017.1	0	Zinc finger CCCH domain-containing protein 17
Petunia inflata	Peinf101Scf00413g09022.1	8.00E-37	Zinc finger CCCH domain-containing protein 32

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
-	-	-

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF15663.1	zf-CCCH_3	32	86

Expression pattern

1. Expression trend for Solyc04g008550.2 global RNA-seq network

2. Expression trend for Solyc04g008550.2 tissue preferential conditional network

3. Expression trend for Solyc04g008550.2 stress differential conditional network

4. Expression trend for Solyc04g008550.2 in different samples during fruit ripening

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