Gene detail

Solyc04g015630.2's detail annotation

Phytozome annotation

	LRR and NB-ARC domains-containing disease resistance protein

LRR and NB-ARC domains-containing disease resistance protein

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	Solyc04g012120.2 Solyc11g010200.1 Solyc12g057110.2
miRNA-target relationship	sly-miR171c

Functional module

Module ID	Function Annotation	Category
TreatCFM000698	transcription factor TFIID complex transcription initiation, DNA-dependent serine-type carboxypeptidase activity reductive monocarboxylic acid cycle ternatin C3 biosynthesis	Stress differential network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc04g015630.2	SL2.40	phytozomev10	SL2.40ch04	5927164	5929199	-

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc04g015630.2
GTATATGGGTCTCGTGCGTCTCGTGTGTTTAAAGTAAAGGAAGTATTAGAACAAATTGTGAATTCAGTTAGAGAAAATTTATGTGAGAAACTTGATATGAATGAACTGAAGAATCTAGTTCATGAGACTTTGTATGGAAAGAATTATTTGATTGTGTTAGATGATGTGTGGAATGAGGACACAGTGTAGTGGGATGAACTGCAGAAGTTGTTGATGGTGGGTGCTTGTGGAAGTAAGATTCTTGTAACTACTCGGAAAACGGAAGTAGCTTCGATAATGGGGACGGCTCCTGCATACTGTTTGAACGGTTTGTCACATGAAGATAGTCTGACTTTGTTCTTAAGGCATTTGAACAAGGTCAGGAAGTGCTCCATCCAAATCTCGTTTGGATTGCGCCAATGATAGTGCGTAAATGTGAGGGAAATCCCTTATTCTTAATAATTGTAGGATCTTCATTGCAGAAGAAAACTGAGAGACGGGAGTGGAATATAGTTAACAGTCACAGCGGGTGGAACTCAAATCAGAACGAAGAAATTTCATCTGCAGTAAGAGTGAGCTATGAACAATTGTCATCTTATCTCAAAGTTTGTCTTGCTTACTGCTCAATATTTCCCAAGGGCTGTGTGATTGAAATAGATAAATTGATACAGCTAGTAGCAGAAGGTCTCATTAGTAAGTCTAATGAATCAGAAGATCTTGAGCACGTTGCCATTCAACATTTCCGAGAGTTATTGTCGAGATCCTTCTTTCAAGACGTTGAAGAATATCGTTCCGTTTATACTTCAATCTGTACAATGCATGACCTTGTACATGATCTTGCACTGTCAGCAGCAGGGGTTGAATTCTGTGCAGTAAATTCTCACATACAAAACATTTCTGATGAGGTCAGACATGTGGTGTTTTCTGAATATGATTTGTCAGGCAAGGAACTGCCAGCATCCCTTCTCAGAAACCAGGCATTAAGGACCATATCCTTCTCCTTTGATGGAGTAGGGGCGATGAGTACGATGTTCGTTGAGAATTGCATAGCAAGATTATGCAACTTAAGGTGCTAGATATCAGTGATTCATGTTTCGATGAGCTGCCTAGCTCTGTTGGCGAATTGATGTATTTAAGAATCTTGATGTAAGTTCCAACGGAAGCATTAAAGAATTACCTGATTCGATTAACAAGTTGCTGAGCTTACAGACACTCCGAATTTCTCATTGTCCACAACTTGAAGGGCTGCCTAAAGATATTGGAAATTTGATCAGCCTAAGACACCTGTATATAACCACCAAGCAAGCATGTTTACCTGATAAAGCAATTGTCTGCTTATCATCTCTTCGTTCTTTGTGCATTCATAACTGCAACAATCTCGTATCTTTGTCTGAAGGTCTGCAACATCTGACTAACCTTCGCACTTTGGCAATCATCGGTTGCCCAAGACTGACCTTTTTCCCAATTGCTATGAAGCACCTTACTGCTTTAGAAAATCTGTTGATTGTTGACTGTAAAGAGCTCACATTGTTGGAGTGGCAAGATATTGAAGGACTTAGGATGCTTCGGTCATTGGTTATCGGAGGCTTACCTGAATTGGAGTCAAAAGATGTTCACTGCCTCGGGAGCCTTCAGATGTTGGTACTTGCTGGTTTACCAGAGGTAGTTACTTCGCCGCGATGGCTTGAAGGTGCTAGTGCTACTCTACAATACCTGAGGGTGGAAAGGTGCCTGAATTTTGCAGCATTGCCAAACTGGCTGGCAAATCTTACTGCACTTGAAAAACTTGAAATTTCCAAGTGCCGTAAATCATTTTCATTGCCCGAGGGAATGAGTTGCCTCACGAACCTGAAGGTACTTAAGATCGACAATTGACTGATCGTGAGTTCAGAATGCCAAGGCAGGACATCTCATATTTCTGAGGCTAAAATCAACTGACTGATCTTGAGTTTCGCTTCTTTCATACCTTGGTTGGTTATATCATGTTTTATTTTTCCATGTATTTTCCAGTTTTTTACTTCTTCTTCCCATCTGCTTGTTTCACAGTCTTGTTTGTG
Transcript:
Solyc04g015630.2.1
GTATATGGGTCTCGTGCGTCTCGTGTGTTTAAAGTAAAGGAAGTATTAGAACAAATTGTGAATTCAGTTAGAGAAAATTTATGTGAGAAACTTGATATGAATGAACTGAAGAATCTAGTTCATGAGACTTTGTATGGAAAGAATTATTTGATTGTGTTAGATGATGTGTGGAATGAGGACACAGTGTAGTGGGATGAACTGCAGAAGTTGTTGATGGTGGGTGCTTGTGGAAGTAAGATTCTTGTAACTACTCGGAAAACGGAAGTAGCTTCGATAATGGGGACGGCTCCTGCATACTGTTTGAACGGTTTGTCACATGAAGATAGTCTGACTTTGTTCTTAAGGCATTTGAACAAGAAGAAAACTGAGAGACGGGAGTGGAATATAGTTAACAGTCACAGCGGGTGGAACTCAAATCAGAACGAAGAAATTTCATCTGCAGTAAGAGTGAGCTATGAACAATTGTCATCTTATCTCAAAGTTTGTCTTGCTTACTGCTCAATATTTCCCAAGGGCTGTGTGATTGAAATAGATAAATTGATACAGCTAGTAGCAGAAGGTCTCATTAGTAAGTCTAATGAATCAGAAGATCTTGAGCACGTTGCCATTCAACATTTCCGAGAGTTATTGTCGAGATCCTTCTTTCAAGACGTTGAAGAATATCGTTCCGTTTATACTTCAATCTGTACAATGCATGACCTTGTACATGATCTTGCACTGTCAGCAGCAGGGGTTGAATTCTGTGCAGTAAATTCTCACATACAAAACATTTCTGATGAGGTCAGACATGTGGTGTTTTCTGAATATGATTTGTCAGGCAAGGAACTGCCAGCATCCCTTCTCAGAAACCAGGCATTAAGGACCATATCCTTCTCCTTTGATGGAGTAGGGGCGATGAGTACGATGTTCGTTGAGAATTGCATAGCAAGATTATGCAACTTAAGTTCCAACGGAAGCATTAAAGAATTACCTGATTCGATTAACAAGTTGCTGAGCTTACAGACACTCCGAATTTCTCATTGTCCACAACTTGAAGGGCTGCCTAAAGATATTGGAAATTTGATCAGCCTAAGACACCTGTATATAACCACCAAGCAAGCATGTTTACCTGATAAAGCAATTGTCTGCTTATCATCTCTTCGTTCTTTGTGCATTCATAACTGCAACAATCTCGTATCTTTGTCTGAAGGTCTGCAACATCTGACTAACCTTCGCACTTTGGCAATCATCGGTTGCCCAAGACTGACCTTTTTCCCAATTGCTATGAAGCACCTTACTGCTTTAGAAAATCTGTTGATTGTTGACTGTAAAGAGCTCACATTGTTGGAGTGGCAAGATATTGAAGGACTTAGGATGCTTCGGTCATTGGTTATCGGAGGCTTACCTGAATTGGAGTCAAAAGATGTTCACTGCCTCGGGAGCCTTCAGATGTTGGTACTTGCTGGTTTACCAGAGGTAGTTACTTCGCCGCGATGGCTTGAAGGTGCTAGTGCTACTCTACAATACCTGAGGGTGGAAAGGTGCCTGAATTTTGCAGCATTGCCAAACTGGCTGGCAAATCTTACTGCACTTGAAAAACTTGAAATTTCCAAGTGCCGTAAATCATTTTCATTGCCCGAGGGAATGAGTTGCCTCACGAACCTGAAGGTACTTAAGATCGACAATTGACTGATCGTGAGTTCAGAATGCCAAGGCAGGACATCTCATATTTCTGAGGCTAAAATCAACTGACTGATCTTGAGTTTCGCTTCTTTCATACCTTGGTTGGTTATATCATGTTTTATTTTTCCATGTATTTTCCAGTTTTTTACTTCTTCTTCCCATCTGCTTGTTTCACAGTCTTGTTTGTG
CDS:
Solyc04g015630.2.1
ATGGTGGGTGCTTGTGGAAGTAAGATTCTTGTAACTACTCGGAAAACGGAAGTAGCTTCGATAATGGGGACGGCTCCTGCATACTGTTTGAACGGTTTGTCACATGAAGATAGTCTGACTTTGTTCTTAAGGCATTTGAACAAGAAGAAAACTGAGAGACGGGAGTGGAATATAGTTAACAGTCACAGCGGGTGGAACTCAAATCAGAACGAAGAAATTTCATCTGCAGTAAGAGTGAGCTATGAACAATTGTCATCTTATCTCAAAGTTTGTCTTGCTTACTGCTCAATATTTCCCAAGGGCTGTGTGATTGAAATAGATAAATTGATACAGCTAGTAGCAGAAGGTCTCATTAGTAAGTCTAATGAATCAGAAGATCTTGAGCACGTTGCCATTCAACATTTCCGAGAGTTATTGTCGAGATCCTTCTTTCAAGACGTTGAAGAATATCGTTCCGTTTATACTTCAATCTGTACAATGCATGACCTTGTACATGATCTTGCACTGTCAGCAGCAGGGGTTGAATTCTGTGCAGTAAATTCTCACATACAAAACATTTCTGATGAGGTCAGACATGTGGTGTTTTCTGAATATGATTTGTCAGGCAAGGAACTGCCAGCATCCCTTCTCAGAAACCAGGCATTAAGGACCATATCCTTCTCCTTTGATGGAGTAGGGGCGATGAGTACGATGTTCGTTGAGAATTGCATAGCAAGATTATGCAACTTAAGTTCCAACGGAAGCATTAAAGAATTACCTGATTCGATTAACAAGTTGCTGAGCTTACAGACACTCCGAATTTCTCATTGTCCACAACTTGAAGGGCTGCCTAAAGATATTGGAAATTTGATCAGCCTAAGACACCTGTATATAACCACCAAGCAAGCATGTTTACCTGATAAAGCAATTGTCTGCTTATCATCTCTTCGTTCTTTGTGCATTCATAACTGCAACAATCTCGTATCTTTGTCTGAAGGTCTGCAACATCTGACTAACCTTCGCACTTTGGCAATCATCGGTTGCCCAAGACTGACCTTTTTCCCAATTGCTATGAAGCACCTTACTGCTTTAGAAAATCTGTTGATTGTTGACTGTAAAGAGCTCACATTGTTGGAGTGGCAAGATATTGAAGGACTTAGGATGCTTCGGTCATTGGTTATCGGAGGCTTACCTGAATTGGAGTCAAAAGATGTTCACTGCCTCGGGAGCCTTCAGATGTTGGTACTTGCTGGTTTACCAGAGGTAGTTACTTCGCCGCGATGGCTTGAAGGTGCTAGTGCTACTCTACAATACCTGAGGGTGGAAAGGTGCCTGAATTTTGCAGCATTGCCAAACTGGCTGGCAAATCTTACTGCACTTGAAAAACTTGAAATTTCCAAGTGCCGTAAATCATTTTCATTGCCCGAGGGAATGAGTTGCCTCACGAACCTGAAGGTACTTAAGATCGACAATTGA
Protein:
Solyc04g015630.2.1
MVGACGSKILVTTRKTEVASIMGTAPAYCLNGLSHEDSLTLFLRHLNKKKTERREWNIVNSHSGWNSNQNEEISSAVRVSYEQLSSYLKVCLAYCSIFPKGCVIEIDKLIQLVAEGLISKSNESEDLEHVAIQHFRELLSRSFFQDVEEYRSVYTSICTMHDLVHDLALSAAGVEFCAVNSHIQNISDEVRHVVFSEYDLSGKELPASLLRNQALRTISFSFDGVGAMSTMFVENCIARLCNLSSNGSIKELPDSINKLLSLQTLRISHCPQLEGLPKDIGNLISLRHLYITTKQACLPDKAIVCLSSLRSLCIHNCNNLVSLSEGLQHLTNLRTLAIIGCPRLTFFPIAMKHLTALENLLIVDCKELTLLEWQDIEGLRMLRSLVIGGLPELESKDVHCLGSLQMLVLAGLPEVVTSPRWLEGASATLQYLRVERCLNFAALPNWLANLTALEKLEISKCRKSFSLPEGMSCLTNLKVLKIDN*

Gene:

>Solyc04g015630.2

GTATATGGGTCTCGTGCGTCTCGTGTGTTTAAAGTAAAGGAAGTATTAGAACAAATTGTGAATTCAGTTAGAGAAAATTTATGTGAGAAACTTGATATGAATGAACTGAAGAATCTAGTTCATGAGACTTTGTATGGAAAGAATTATTTGATTGTGTTAGATGATGTGTGGAATGAGGACACAGTGTAGTGGGATGAACTGCAGAAGTTGTTGATGGTGGGTGCTTGTGGAAGTAAGATTCTTGTAACTACTCGGAAAACGGAAGTAGCTTCGATAATGGGGACGGCTCCTGCATACTGTTTGAACGGTTTGTCACATGAAGATAGTCTGACTTTGTTCTTAAGGCATTTGAACAAGGTCAGGAAGTGCTCCATCCAAATCTCGTTTGGATTGCGCCAATGATAGTGCGTAAATGTGAGGGAAATCCCTTATTCTTAATAATTGTAGGATCTTCATTGCAGAAGAAAACTGAGAGACGGGAGTGGAATATAGTTAACAGTCACAGCGGGTGGAACTCAAATCAGAACGAAGAAATTTCATCTGCAGTAAGAGTGAGCTATGAACAATTGTCATCTTATCTCAAAGTTTGTCTTGCTTACTGCTCAATATTTCCCAAGGGCTGTGTGATTGAAATAGATAAATTGATACAGCTAGTAGCAGAAGGTCTCATTAGTAAGTCTAATGAATCAGAAGATCTTGAGCACGTTGCCATTCAACATTTCCGAGAGTTATTGTCGAGATCCTTCTTTCAAGACGTTGAAGAATATCGTTCCGTTTATACTTCAATCTGTACAATGCATGACCTTGTACATGATCTTGCACTGTCAGCAGCAGGGGTTGAATTCTGTGCAGTAAATTCTCACATACAAAACATTTCTGATGAGGTCAGACATGTGGTGTTTTCTGAATATGATTTGTCAGGCAAGGAACTGCCAGCATCCCTTCTCAGAAACCAGGCATTAAGGACCATATCCTTCTCCTTTGATGGAGTAGGGGCGATGAGTACGATGTTCGTTGAGAATTGCATAGCAAGATTATGCAACTTAAGGTGCTAGATATCAGTGATTCATGTTTCGATGAGCTGCCTAGCTCTGTTGGCGAATTGATGTATTTAAGAATCTTGATGTAAGTTCCAACGGAAGCATTAAAGAATTACCTGATTCGATTAACAAGTTGCTGAGCTTACAGACACTCCGAATTTCTCATTGTCCACAACTTGAAGGGCTGCCTAAAGATATTGGAAATTTGATCAGCCTAAGACACCTGTATATAACCACCAAGCAAGCATGTTTACCTGATAAAGCAATTGTCTGCTTATCATCTCTTCGTTCTTTGTGCATTCATAACTGCAACAATCTCGTATCTTTGTCTGAAGGTCTGCAACATCTGACTAACCTTCGCACTTTGGCAATCATCGGTTGCCCAAGACTGACCTTTTTCCCAATTGCTATGAAGCACCTTACTGCTTTAGAAAATCTGTTGATTGTTGACTGTAAAGAGCTCACATTGTTGGAGTGGCAAGATATTGAAGGACTTAGGATGCTTCGGTCATTGGTTATCGGAGGCTTACCTGAATTGGAGTCAAAAGATGTTCACTGCCTCGGGAGCCTTCAGATGTTGGTACTTGCTGGTTTACCAGAGGTAGTTACTTCGCCGCGATGGCTTGAAGGTGCTAGTGCTACTCTACAATACCTGAGGGTGGAAAGGTGCCTGAATTTTGCAGCATTGCCAAACTGGCTGGCAAATCTTACTGCACTTGAAAAACTTGAAATTTCCAAGTGCCGTAAATCATTTTCATTGCCCGAGGGAATGAGTTGCCTCACGAACCTGAAGGTACTTAAGATCGACAATTGACTGATCGTGAGTTCAGAATGCCAAGGCAGGACATCTCATATTTCTGAGGCTAAAATCAACTGACTGATCTTGAGTTTCGCTTCTTTCATACCTTGGTTGGTTATATCATGTTTTATTTTTCCATGTATTTTCCAGTTTTTTACTTCTTCTTCCCATCTGCTTGTTTCACAGTCTTGTTTGTG

Transcript:

CDS:

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_29564	8.00E-05	Nbs-lrr, resistance protein
Nicotiana tabacum	gene_27983	8.00E-05	Nbs-lrr, resistance protein
Nicotiana tabacum	gene_29474	2.00E-07	Nbs-lrr, resistance protein
Nicotiana benthamiana(v0.44)	NbS00020742g0011.1	2.00E-59	Nbs-lrr, resistance protein
Nicotiana benthamiana(v0.44)	NbS00034734g0003.1	4.00E-119	Nbs-lrr, resistance protein
Nicotiana benthamiana(v0.44)	NbS00026568g0006.1	0	Nbs-lrr, resistance protein
Nicotiana benthamiana(v0.44)	NbS00047736g0006.1	9.00E-68	Nbs-lrr, resistance protein
Nicotiana benthamiana(v0.44)	NbS00050904g0006.1	0	Nbs-lrr, resistance protein
Capsicum annuum	Capang05g000121	9E-139
Capsicum annuum	Capang05g000120	9E-114
Capsicum annuum	Capana05g000121	0
Capsicum annuum	Capana05g000118	1.00E-138
Capsicum annuum	Capana05g000119	3.00E-138
Capsicum annuum	CA05g01210	0	Leucine-rich repeat containing protein, putative
Capsicum annuum	CA05g01180	6.00E-152	NBS-LRR protein (Fragment)
Capsicum annuum	CA05g01170	7.00E-138	Leucine-rich repeat containing protein, putative
Nicotiana benthamiana(v1.01)	Niben101Scf04388g02009.1	3.00E-131	Leucine-rich repeat-containing protein 18
Nicotiana benthamiana(v1.01)	Niben101Scf33912g00003.1	4.00E-131	Leucine-rich repeat-containing protein 40
Nicotiana benthamiana(v1.01)	Niben101Scf04388g02007.1	2.00E-103	Leucine-rich repeat-containing protein 40
Solanum pennellii	Sopen04g007710.1	9.00E-71	hypothetical protein
Petunia axillaris	Peaxi162Scf00493g00012.1	0	Disease resistance protein (CC-NBS-LRR class) family
Petunia axillaris	Peaxi162Scf00493g00117.1	0	Disease resistance protein (CC-NBS-LRR class) family
Petunia axillaris	Peaxi162Scf00493g00004.1	1.00E-142	Disease resistance protein (CC-NBS-LRR class) family
Petunia inflata	Peinf101Scf06832g00002.1	1.00E-141	Unknown protein
Petunia inflata	Peinf101Scf01537g01005.1	2.00E-140	Disease resistance protein (CC-NBS-LRR class) family
Petunia inflata	Peinf101Scf01537g01028.1	1.00E-136	NBS-LRR protein, partial [Oryza sativa Japonica Group]

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
GO:0043531	ADP binding	molecular_function
GO:0006915	apoptotic process	biological_process
GO:0005524	ATP binding	molecular_function

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF00931.18	NB-ARC	48	120

Expression pattern

1. Expression trend for Solyc04g015630.2 global RNA-seq network

2. Expression trend for Solyc04g015630.2 tissue preferential conditional network

3. Expression trend for Solyc04g015630.2 stress differential conditional network

4. Expression trend for Solyc04g015630.2 in different samples during fruit ripening

TOP