Solyc05g052120.2's detail annotation
Phytozome annotation
| Pectin lyase-like superfamily protein | ||
Network
| Network Category | Global Network | Tissue Preferential Network | Stress differential network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| PPI relationship | null | ||
| miRNA-target relationship | null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000016 | transmembrane transport membrane integral to membrane pectate lyase activity cation transport solute:hydrogen antiporter activity protein phosphorylation protein kinase activity exocytosis phospholipid binding response to stress vesicle docking enzyme inhibitor activity PPC:5.2.1: Other Kinase Transcription factor: LIM nutrient reservoir activity cell wall transferase activity, transferring glycosyl groups cell wall modification pectinesterase activity Pentose_and_glucuronate_interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|---|---|---|---|---|---|
| Solyc05g052120.2 | SL2.40 | phytozomev10 | SL2.40ch05 | 61579849 | 61583887 | + |
Gene structure and chromatin state
| more details in UCSC | details of chromatin state |
Sequences
| Gene: |
| >Solyc05g052120.2 |
| Transcript: |
| Solyc05g052120.2.1 |
| CDS: |
| Solyc05g052120.2.1 |
| Protein: |
| Solyc05g052120.2.1 |
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|---|---|---|
| Nicotiana benthamiana(v0.44) | NbS00002880g0011.1 | 5.00E-121 | Pectinesterase (AHRD V1 **** D8VPP5_OLEEU) |
| Solanum tuberosum | PGSC0003DMP400020674 | 0 | Conserved gene of unknown function |
| Solanum tuberosum | PGSC0003DMP400020654 | 3.00E-175 | Conserved gene of unknown function |
| Capsicum annuum | Capang05g001565 | 9E-176 | |
| Capsicum annuum | Capana05g001993 | 5.00E-176 | |
| Capsicum annuum | Capana05g001994 | 8.00E-170 | |
| Capsicum annuum | CA05g14840 | 4.00E-176 | Pectinesterase |
| Capsicum annuum | CA05g14850 | 8.00E-170 | Pectinesterase |
| Nicotiana benthamiana(v1.01) | Niben101Scf00454g05009.1 | 1.00E-166 | Pectinesterase 1 |
| Solanum pennellii | Sopen05g030660.1 | 0 | Pectinesterase |
| Solanum pennellii | Sopen05g030650.1 | 5.00E-173 | Pectinesterase |
| Petunia axillaris | Peaxi162Scf00167g01016.1 | 6.00E-165 | Pectin lyase-like superfamily protein |
| Petunia axillaris | Peaxi162Scf00167g01017.1 | 8.00E-163 | Pectin lyase-like superfamily protein |
| Petunia inflata | Peinf101Scf02573g01014.1 | 2.00E-164 | Pectin lyase-like superfamily protein |
| Petunia inflata | Peinf101Scf02573g01021.1 | 4.00E-156 | Pectin lyase-like superfamily protein |
Gene family
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | pectinesterase 1-like | EC:3.1.1.11 | Pentose and glucuronate interconversions | sly00040 |
| Starch and sucrose metabolism | sly00500 |
PlantCyC
| Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|
| EC-3.1.1.11 | pectinesterase | homogalacturonan degradation | PWY-1081 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0030599 | pectinesterase activity | molecular_function |
| GO:0042545 | cell wall modification | biological_process |
| GO:0005618 | cell wall | cellular_component |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|---|---|---|
| PF01095.15 | Pectinesterase | 47 | 332 |