Solyc07g052350.2's detail annotation

Phytozome annotation

aconitase 3

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipSolyc07g049220.2  
miRNA-target relationshipnull

Functional module

Module IDFunction AnnotationCategory
TissueCFM000608alpha-L-fucosidase activity
Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase
TCA cycle II (plants and fungi)
glyoxylate cycle
glutamine biosynthesis III
TCA cycle variation V (plant)
Other glycan degradation
Carbon fixation pathways in prokaryotes
hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GH89
Tissue preferential network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc07g052350.2SL2.40phytozomev10SL2.40ch075818051458188952+

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation
Arabidopsis thalianaAT2G057100aconitase 3
Arabidopsis thalianaAT4G269700aconitase 2
Arabidopsis thalianaAT4G358300aconitase 1
Nicotiana tabacumgene_645403-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_64502.00E-853-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_7819503-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_5182403-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_257903-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_1090003-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_5533503-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_6924203-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_7509203-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_796403-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_7664003-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_6822303-isopropylmalate dehydratase large subunit
Nicotiana tabacumgene_787583.00E-1113-isopropylmalate dehydratase large subunit
Nicotiana benthamiana(v0.44)NbS00011381g0003.11.00E-173-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Nicotiana benthamiana(v0.44)NbS00039966g0002.11.00E-343-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Nicotiana benthamiana(v0.44)NbS00020657g0018.103-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Nicotiana benthamiana(v0.44)NbS00017132g0016.103-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Nicotiana benthamiana(v0.44)NbS00037277g0010.17.00E-293-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Nicotiana benthamiana(v0.44)NbS00008022g0007.103-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD)
Solanum tuberosumPGSC0003DMP4000153740Conserved gene of unknown function
Solanum tuberosumPGSC0003DMP4000384620Gene of unknown function
Capsicum annuumCapang07g0014570
Capsicum annuumCapang09g0004870
Capsicum annuumCapang01g0051390
Capsicum annuumCapana07g0014290
Capsicum annuumCapana07g0014410
Capsicum annuumCapana00g0041970
Capsicum annuumCA07g190400Aconitate hydratase
Capsicum annuumCA09g074200Putative aconitase
Capsicum annuumCA07g118900Putative aconitase
Nicotiana benthamiana(v1.01)Niben101Scf00859g01014.103-isopropylmalate dehydratase large subunit
Nicotiana benthamiana(v1.01)Niben101Scf02894g00005.103-isopropylmalate dehydratase large subunit
Nicotiana benthamiana(v1.01)Niben101Scf02543g04010.103-isopropylmalate dehydratase large subunit
Solanum pennelliiSopen07g025970.10Aconitase family (aconitate hydratase)
Solanum pennelliiSopen12g001810.10Aconitase family (aconitate hydratase)
Petunia axillarisPeaxi162Scf00007g00833.10Aconitate hydratase 1
Petunia axillarisPeaxi162Scf00047g01818.10Aconitate hydratase 1
Petunia axillarisPeaxi162Scf00462g00038.10Aconitate hydratase 1
Petunia inflataPeinf101Scf00264g09029.10Aconitate hydratase 1
Petunia inflataPeinf101Scf01775g05016.10Aconitate hydratase 1
Petunia inflataPeinf101Scf00039g10007.10Aconitate hydratase 1
Solanum melongenaSme2.5_00420.1_g00009.10

Gene family

Gene familySubfamily
--

KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01681aconitate hydratase EC:4.2.1.3 Carbon metabolism sly01200
2-Oxocarboxylic acid metabolismsly01210
Biosynthesis of amino acidssly01230
Citrate cycle (TCA cycle)sly00020
Glyoxylate and dicarboxylate metabolismsly00630

PlantCyC

Enzyme ID Description Pathway Pathway id
-cis-aconitate hydrataseglutamine biosynthesis IIIPWY-6549
-citrate dehydrataseglutamine biosynthesis IIIPWY-6549
-citrate dehydrataseTCA cycle variation V (plant)PWYQT-4481
-cis-aconitate hydrataseTCA cycle variation V (plant)PWYQT-4481
-citrate dehydrataseglyoxylate cycleGLYOXYLATE-BYPASS
-cis-aconitate hydrataseglyoxylate cycleGLYOXYLATE-BYPASS
-citrate dehydrataseTCA cycle II (plants and fungi)PWY-5690
-cis-aconitate hydrataseTCA cycle II (plants and fungi)PWY-5690

Gene Ontology

GO termDescriptionCategory
GO:0008152metabolic processbiological_process

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
PF00330.16Aconitase159665
PF00694.15Aconitase_C794922

Expression pattern

 1. Expression trend for Solyc07g052350.2 global RNA-seq network
 2. Expression trend for Solyc07g052350.2 tissue preferential conditional network
 3. Expression trend for Solyc07g052350.2 stress differential conditional network
 4. Expression trend for Solyc07g052350.2 in different samples during fruit ripening
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