Solyc08g006220.2's detail annotation
Phytozome annotation
| Transcriptional factor B3 family protein |
Network
Functional module
| Module ID | Function Annotation | Category |
|---|
| CFinderADM000673 | regulation of mRNA splicing, via spliceosome
nuclease activity
Transcription regulator: C3H
Transcription factor: B3
DNA repair
Base_excision_repair
| global network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|
| Solyc08g006220.2 | SL2.40 | phytozomev10 | SL2.40ch08 | 912609 | 915803 | + |
Gene structure and chromatin state
Sequences
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|
| Nicotiana tabacum | gene_31908 | 9.00E-95 | B3 domain-containing protein Os03g0212300 |
| Nicotiana tabacum | gene_31815 | 9.00E-95 | B3 domain-containing protein Os03g0212300 |
| Nicotiana benthamiana(v0.44) | NbS00006487g0002.1 | 5.00E-74 | B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ) |
| Nicotiana benthamiana(v0.44) | NbS00001923g0008.1 | 3.00E-62 | B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ) |
| Capsicum annuum | Capang08g000925 | 1E-61 | |
| Capsicum annuum | Capang11g000158 | 2E-55 | |
| Capsicum annuum | Capana11g000157 | 8.00E-80 | |
| Capsicum annuum | CA01g32310 | 8.00E-61 | Detected protein of unknown function |
| Nicotiana benthamiana(v1.01) | Niben101Scf04748g03007.1 | 7.00E-59 | DNA binding protein, putative isoform 1 [Theobroma cacao] gb|EOY29249.1| DNA binding protein, putative isoform 1 [Theobroma cacao] |
| Solanum pennellii | Sopen08g002190.2 | 2.00E-143 | B3 DNA binding domain |
| Petunia axillaris | Peaxi162Scf00326g00321.1 | 2.00E-57 | Transcriptional factor B3 family protein |
| Petunia inflata | Peinf101Scf00146g02003.1 | 7.00E-72 | Transcriptional factor B3 family protein |
Gene family
KEGG pathway
| KO |
Enzyme |
Enzyme ID |
pathway |
mapID |
| - | - | - | - | - |
PlantCyC
| Enzyme ID |
Description |
Pathway |
Pathway id |
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
Pfam Domain
Expression pattern