Solyc08g007400.2's detail annotation
Phytozome annotation
| Ubiquitin-like superfamily protein | ||
Network
| Network Category | Global Network | Tissue Preferential Network | Stress differential network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist | Top300 PCC genelist |
| PPI relationship | Solyc01g066590.2 Solyc01g096100.2 Solyc05g012190.2 Solyc01g110300.2 Solyc07g032110.2 Solyc08g074780.2 Solyc02g093710.1 Solyc11g005640.1 | ||
| miRNA-target relationship | null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000617 | autophagic vacuole assembly cation binding alpha-amylase activity microtubule-based process microtubule GTPase activity cytoplasm calcium ion binding 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Ubiquinone and other terpenoid-quinone biosynthesis Carbohydrate digestion and absorption hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | Tissue preferential network |
Location information
| Gene | Assembly | Sources | Chr | Start | End | Strand |
|---|---|---|---|---|---|---|
| Solyc08g007400.2 | SL2.40 | phytozomev10 | SL2.40ch08 | 1972192 | 1974125 | + |
Gene structure and chromatin state
| more details in UCSC | details of chromatin state |
Sequences
| Gene: |
| >Solyc08g007400.2 |
| Transcript: |
| Solyc08g007400.2.1 |
| CDS: |
| Solyc08g007400.2.1 |
| Protein: |
| Solyc08g007400.2.1 |
Top hits annotation
| Species | Top Hits | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G60640 | 1.00E-55 | AUTOPHAGY 8G |
| Arabidopsis thaliana | AT4G16520 | 2.00E-58 | autophagy 8f |
| Nicotiana tabacum | gene_26871 | 1.00E-77 | Autophagy-related protein 8 |
| Nicotiana tabacum | gene_23249 | 3.00E-78 | Autophagy-related protein 8 |
| Nicotiana tabacum | gene_20678 | 3.00E-78 | Autophagy-related protein 8 |
| Nicotiana tabacum | gene_25150 | 1.00E-77 | Autophagy-related protein 8 |
| Nicotiana tabacum | gene_26836 | 1.00E-77 | Autophagy-related protein 8 |
| Nicotiana tabacum | gene_23049 | 3.00E-78 | Autophagy-related protein 8 |
| Solanum tuberosum | PGSC0003DMP400022075 | 9.00E-63 | Cytochrome P450 |
| Solanum tuberosum | PGSC0003DMP400022074 | 9.00E-63 | Electron transporter |
| Solanum tuberosum | PGSC0003DMP400008510 | 5.00E-60 | F-box protein |
| Capsicum annuum | Capang08g001262 | 1E-44 | |
| Capsicum annuum | Capana01g004401 | 1.00E-61 | |
| Capsicum annuum | Capana01g000559 | 3.00E-59 | |
| Capsicum annuum | CA01g33970 | 1.00E-61 | Unknown protein |
| Capsicum annuum | CA01g13140 | 3.00E-59 | Unknown protein |
| Nicotiana benthamiana(v1.01) | Niben101Scf13429g04022.1 | 6.00E-61 | Autophagy-related protein 8f |
| Nicotiana benthamiana(v1.01) | Niben101Scf08640g00001.1 | 1.00E-60 | Autophagy-related protein 8f |
| Solanum pennellii | Sopen08g003350.1 | 2.00E-63 | Autophagy protein Atg8 ubiquitin like |
| Solanum pennellii | Sopen08g027280.1 | 4.00E-60 | Autophagy protein Atg8 ubiquitin like |
| Petunia axillaris | Peaxi162Scf00102g01135.1 | 5.00E-62 | AUTOPHAGY 8E |
| Petunia axillaris | Peaxi162Scf00002g01616.1 | 8.00E-60 | AUTOPHAGY 8E |
| Petunia inflata | Peinf101Scf00229g01001.1 | 8.00E-60 | AUTOPHAGY 8E |
| Solanum melongena | Sme2.5_00690.1_g00012.1 | 9.00E-49 |
Gene family
| Gene family | Subfamily |
|---|---|
| - | - |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08341 | autophagy-related protein 8f | Regulation of autophagy | sly04140 |
PlantCyC
| Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|
| - | - | - | - |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000045 | autophagosome assembly | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
Pfam Domain
| Pfam accession | Pfam name | Alignment start | Alignment end |
|---|---|---|---|
| PF02991.12 | Atg8 | 14 | 117 |