Solyc08g066770.2's detail annotation

Phytozome annotation

Ankyrin repeat family protein

Network

Network CategoryGlobal NetworkTissue Preferential NetworkStress differential network
Coexpression PositiveTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
Coexpression NegativeTop300 PCC genelistTop300 PCC genelistTop300 PCC genelist
PPI relationshipnull
miRNA-target relationshipsly-miR9476-3p  sly-miR9471b-3p  

Functional module

Module IDFunction AnnotationCategory
CFinderADM000528PPC:1.12.5: Leucine Rich Repeat Kinase X
cyanate metabolic process
putrescine biosynthetic process
isocitrate metabolic process
protein-arginine_deiminase_activity
isocitrate dehydrogenase (NADP+) activity
cyanate degradation
putrescine biosynthesis II
glutamine biosynthesis III
Nitrogen_metabolism
global network

Location information

GeneAssemblySourcesChrStartEndStrand
Solyc08g066770.2SL2.40phytozomev10SL2.40ch085280809752813393-

Gene structure and chromatin state

more details in UCSCdetails of chromatin state

Sequences

Gene:
Transcript:
CDS:
Protein:

Top hits annotation

SpeciesTop HitsE-valueAnnotation
Nicotiana tabacumgene_68790Ankyrin repeat family protein
Nicotiana tabacumgene_799450Ankyrin repeat family protein
Nicotiana tabacumgene_732411.1Ankyrin repeat family protein
Nicotiana tabacumgene_700191.1Ankyrin repeat family protein
Nicotiana tabacumgene_23104.00E-176Ankyrin repeat family protein
Nicotiana tabacumgene_766490Ankyrin repeat family protein
Nicotiana tabacumgene_60991.00E-176Ankyrin repeat family protein
Nicotiana tabacumgene_218830Ankyrin repeat family protein
Nicotiana benthamiana(v0.44)NbS00010040g0006.14.00E-36Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY)
Nicotiana benthamiana(v0.44)NbS00012186g0006.10Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY)
Nicotiana benthamiana(v0.44)NbS00002327g0002.18.00E-42Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY)
Solanum tuberosumPGSC0003DMP4000076720Gene of unknown function
Solanum tuberosumPGSC0003DMP4000076770Starch-granule-bound R1 protein
Solanum tuberosumPGSC0003DMP4000213400Conserved gene of unknown function
Capsicum annuumCapang06g0026836.00E-47
Capsicum annuumCapana06g0029136.00E-47
Capsicum annuumCA05g131408.00E-47Ankyrin repeat family protein
Nicotiana benthamiana(v1.01)Niben101Scf09445g04018.14.00E-93ankyrin repeat family protein LENGTH=548
Solanum pennelliiSopen08g020740.10Ankyrin repeats (3 copies)
Solanum pennelliiSopen08g020730.10Ankyrin repeats (3 copies)
Petunia axillarisPeaxi162Scf00161g00126.10Ankyrin repeat family protein
Petunia axillarisPeaxi162Scf00161g00121.15.00E-169Ankyrin repeat family protein
Petunia inflataPeinf101Scf01596g00013.10Ankyrin repeat family protein
Solanum melongenaSme2.5_00147.1_g00014.10

Gene family

Gene familySubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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PlantCyC

Enzyme ID Description Pathway Pathway id
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Gene Ontology

GO termDescriptionCategory
GO:0005515protein bindingmolecular_function

Pfam Domain

Pfam accessionPfam nameAlignment startAlignment end
PF12796.3Ank_2893
PF12796.3Ank_2144231
PF12796.3Ank_2243310
PF13962.2PGG406511

Expression pattern

 1. Expression trend for Solyc08g066770.2 global RNA-seq network
 2. Expression trend for Solyc08g066770.2 tissue preferential conditional network
 3. Expression trend for Solyc08g066770.2 stress differential conditional network
 4. Expression trend for Solyc08g066770.2 in different samples during fruit ripening
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