Gene detail

Solyc09g009400.2's detail annotation

Phytozome annotation

	Arabidopsis thaliana protein of unknown function (DUF794)

Arabidopsis thaliana protein of unknown function (DUF794)

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	sly-miR5303

Functional module

Module ID	Function Annotation	Category
CFinderADM000249		global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc09g009400.2	SL2.40	phytozomev10	SL2.40ch09	2840443	2842868	-

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc09g009400.2
ATGATTCATAGGCGAGTTACATCAGTCTTAAATCTTGGTGGGAATGCGATATTATCGACTGTGAAGGAGCTGGGCAATGTTGGTCCATTGTATTCAACTGTATCAGCCATGGAAACTCTACCAAGAAAGCTGAAAAAGGCTGAAAAAAAACCATGGGTGACGAGTGTTAACGAGCTTAAGCGGAGAGCAAGATTTGAAAAGCAAGAGAGAAGGGTGGTACGTGAAGTTGCACTGCGGCCACCGGAAAATGGGCTATTAGTTGAGAAGTTAATCCCTGTTGCTCATCGTGTGTTAGCTTCAAGAGCTCAGTTGTTAGCTTGTGTTTCGAGGATTTCGGAGGAAATTCCTATTTATTTCTGCAGGTAAGATTCATTTGTGTATCCAAAAGTTGCTCGGACTCTTCAAAATTGTTGTCATATCGGTTTTGGATACACTTATTCAACACACATCCGTTGACAATTTTGACGAGTTGAGCAACGCATCTATGCAAACTTTGTTGCAATTAATCATATGTGAAAGAATAAAATGGTCAAAAAACACACCTGAACTATCACGTTTTTACTAGTTTCACACTCCAATTATAATATTCTTGCCATGTTATACACTTGTACATCTATAGTTCTATAACAAGTTTTCAACTTTAAATTCTTTATTTCAAGTTGAAGTTTGAAATAATGAATTAAATTGTTAAGTAAACATTGATTTGCAAATAATAGATCAAGTTAAGTTGGAATAATGAAATAATTAGTGCAGACAAATGTAAGTATTGGAATGAATTAGACTTGACTAGAACACAACAGATATCGAAGATTCATATGGCTAACTCCTGCTGATTTGGAGTCGAGGCCTTTTTAATTGATGGAAGATTGACTATCTAGCAACTCATTATGAAATTCAACTTTTTCAATCGTCGAGCAATCAGGTCTGTGTTGTGATTTTTGTTCTTTTGTGCAGCTTATGTACCGAAGTTCATGTTGGTCATCCACCACATAAGATCAGAACTTGCGATGTTAGCGGCAGTCAGAAGAACAAAGAGCATACATGGCAAAGAGGGGGCGTAGATCATGTATTACCTGTTGTACAATCTTTTCATCTCTATGACAGGTTAGGAAGAGCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAGGTTTGTCTTTATGTTACTACAATGTTTTCACTTATAATTATTAGTCATTTTTCAATGTGCATTTTCCTATTAAAATACATCAATTTCCTCTCTAGAGCTTCAAGCTATGTTGCTCAGAGTTTCCAAAATTGTTGCCGCACCTGTGTCGACCTCTCCAAAATGCACTACTTTTACAGTATCCGACACGGACCCGTCGACATTTTTGAAGAGTCTAAGCATCATAGACTTAAAAGTATGTTAAAGAATTATTACTTATGGTATGACGAAATTTCTAGTTTGATTTTCTACTACTTATCACTTCTCCAGGATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTGAGATACAACCAACTTTTCTTGCCTTTAAAATTAGGACAATGTATAGAAGGTACTATTATTAGGAAAAGTAACAATAGTTTCATATCGACCTTTAAGATGTTTTAAATGCATGTCATTGTGCATCTATAAAAGCATGTCATTAAGG
Transcript:
Solyc09g009400.2.1
ATGATTCATAGGCGAGTTACATCAGTCTTAAATCTTGGTGGGAATGCGATATTATCGACTGTGAAGGAGCTGGGCAATGTTGGTCCATTGTATTCAACTGTATCAGCCATGGAAACTCTACCAAGAAAGCTGAAAAAGGCTGAAAAAAAACCATGGGTGACGAGTGTTAACGAGCTTAAGCGGAGAGCAAGATTTGAAAAGCAAGAGAGAAGGGTGGTACGTGAAGTTGCACTGCGGCCACCGGAAAATGGGCTATTAGTTGAGAAGTTAATCCCTGTTGCTCATCGTGTGTTAGCTTCAAGAGCTCAGTTGTTAGCTTGTGTTTCGAGGATTTCGGAGGAAATTCCTATTTATTTCTGCAGCTTATGTACCGAAGTTCATGTTGGTCATCCACCACATAAGATCAGAACTTGCGATGTTAGCGGCAGTCAGAAGAACAAAGAGCATACATGGCAAAGAGGGGGCGTAGATCATGTATTACCTGTTGTACAATCTTTTCATCTCTATGACAGGTTAGGAAGAGCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAGGATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTGAGATACAACCAACTTTTCTTGCCTTTAAAATTAGGACAATGTATAGAAGGTACTATTATTAGGAAAAGTAACAATAGTTTCATATCGACCTTTAAGATGTTTTAAATGCATGTCATTGTGCATCTATAAAAGCATGTCATTAAGG
CDS:
Solyc09g009400.2.1
ATGATTCATAGGCGAGTTACATCAGTCTTAAATCTTGGTGGGAATGCGATATTATCGACTGTGAAGGAGCTGGGCAATGTTGGTCCATTGTATTCAACTGTATCAGCCATGGAAACTCTACCAAGAAAGCTGAAAAAGGCTGAAAAAAAACCATGGGTGACGAGTGTTAACGAGCTTAAGCGGAGAGCAAGATTTGAAAAGCAAGAGAGAAGGGTGGTACGTGAAGTTGCACTGCGGCCACCGGAAAATGGGCTATTAGTTGAGAAGTTAATCCCTGTTGCTCATCGTGTGTTAGCTTCAAGAGCTCAGTTGTTAGCTTGTGTTTCGAGGATTTCGGAGGAAATTCCTATTTATTTCTGCAGCTTATGTACCGAAGTTCATGTTGGTCATCCACCACATAAGATCAGAACTTGCGATGTTAGCGGCAGTCAGAAGAACAAAGAGCATACATGGCAAAGAGGGGGCGTAGATCATGTATTACCTGTTGTACAATCTTTTCATCTCTATGACAGGTTAGGAAGAGCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAGGATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAA
Protein:
Solyc09g009400.2.1
MIHRRVTSVLNLGGNAILSTVKELGNVGPLYSTVSAMETLPRKLKKAEKKPWVTSVNELKRRARFEKQERRVVREVALRPPENGLLVEKLIPVAHRVLASRAQLLACVSRISEEIPIYFCSLCTEVHVGHPPHKIRTCDVSGSQKNKEHTWQRGGVDHVLPVVQSFHLYDRLGRAVSHNERLEVDRIPALVELCIQAGVDLPEYPTRRRKFPIYRVAGKLIDFEKRFPKDDLFGKDVETFRSRETIKKHIGDGNYLNLPYDDIKGFAMRGMEAWETMRTGAIQLMKTYGVQTCGYCPELQVGPKGHRVRQCQAFKHQMRDGQHAWQEATIDDLLSTVYVWHVQNPHAGDVLVDSMKRYYGKLPAVVELFSQVGAQVGDDYYHMMRDDVVVPGRDEEKLVV*

Gene:

>Solyc09g009400.2

ATGATTCATAGGCGAGTTACATCAGTCTTAAATCTTGGTGGGAATGCGATATTATCGACTGTGAAGGAGCTGGGCAATGTTGGTCCATTGTATTCAACTGTATCAGCCATGGAAACTCTACCAAGAAAGCTGAAAAAGGCTGAAAAAAAACCATGGGTGACGAGTGTTAACGAGCTTAAGCGGAGAGCAAGATTTGAAAAGCAAGAGAGAAGGGTGGTACGTGAAGTTGCACTGCGGCCACCGGAAAATGGGCTATTAGTTGAGAAGTTAATCCCTGTTGCTCATCGTGTGTTAGCTTCAAGAGCTCAGTTGTTAGCTTGTGTTTCGAGGATTTCGGAGGAAATTCCTATTTATTTCTGCAGGTAAGATTCATTTGTGTATCCAAAAGTTGCTCGGACTCTTCAAAATTGTTGTCATATCGGTTTTGGATACACTTATTCAACACACATCCGTTGACAATTTTGACGAGTTGAGCAACGCATCTATGCAAACTTTGTTGCAATTAATCATATGTGAAAGAATAAAATGGTCAAAAAACACACCTGAACTATCACGTTTTTACTAGTTTCACACTCCAATTATAATATTCTTGCCATGTTATACACTTGTACATCTATAGTTCTATAACAAGTTTTCAACTTTAAATTCTTTATTTCAAGTTGAAGTTTGAAATAATGAATTAAATTGTTAAGTAAACATTGATTTGCAAATAATAGATCAAGTTAAGTTGGAATAATGAAATAATTAGTGCAGACAAATGTAAGTATTGGAATGAATTAGACTTGACTAGAACACAACAGATATCGAAGATTCATATGGCTAACTCCTGCTGATTTGGAGTCGAGGCCTTTTTAATTGATGGAAGATTGACTATCTAGCAACTCATTATGAAATTCAACTTTTTCAATCGTCGAGCAATCAGGTCTGTGTTGTGATTTTTGTTCTTTTGTGCAGCTTATGTACCGAAGTTCATGTTGGTCATCCACCACATAAGATCAGAACTTGCGATGTTAGCGGCAGTCAGAAGAACAAAGAGCATACATGGCAAAGAGGGGGCGTAGATCATGTATTACCTGTTGTACAATCTTTTCATCTCTATGACAGGTTAGGAAGAGCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAGGTTTGTCTTTATGTTACTACAATGTTTTCACTTATAATTATTAGTCATTTTTCAATGTGCATTTTCCTATTAAAATACATCAATTTCCTCTCTAGAGCTTCAAGCTATGTTGCTCAGAGTTTCCAAAATTGTTGCCGCACCTGTGTCGACCTCTCCAAAATGCACTACTTTTACAGTATCCGACACGGACCCGTCGACATTTTTGAAGAGTCTAAGCATCATAGACTTAAAAGTATGTTAAAGAATTATTACTTATGGTATGACGAAATTTCTAGTTTGATTTTCTACTACTTATCACTTCTCCAGGATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTGAGATACAACCAACTTTTCTTGCCTTTAAAATTAGGACAATGTATAGAAGGTACTATTATTAGGAAAAGTAACAATAGTTTCATATCGACCTTTAAGATGTTTTAAATGCATGTCATTGTGCATCTATAAAAGCATGTCATTAAGG

Transcript:

CDS:

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Arabidopsis thaliana	AT1G64810	2.00E-74	ACCUMULATION OF PHOTOSYSTEM ONE 1
Arabidopsis thaliana	AT5G61930	1.00E-88	ACCUMULATION OF PHOTOSYSTEM ONE 3
Nicotiana tabacum	gene_79519	0	APO protein 1, chloroplastic
Nicotiana tabacum	gene_41291	0	APO protein 1, chloroplastic
Nicotiana tabacum	gene_76249	0	APO protein 1, chloroplastic
Nicotiana tabacum	gene_39899	0	APO protein 1, chloroplastic
Nicotiana tabacum	gene_77812	0	APO protein 1, chloroplastic
Nicotiana tabacum	gene_40634	0	APO protein 1, chloroplastic
Nicotiana benthamiana(v0.44)	NbS00009732g0005.1	6.00E-69	APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH)
Nicotiana benthamiana(v0.44)	NbS00032372g0010.1	0	APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH)
Solanum tuberosum	PGSC0003DMP400039424	1.00E-75	Integrase core domain containing protein
Solanum tuberosum	PGSC0003DMP400004770	1.00E-72	Allyl alcohol dehydrogenase
Solanum tuberosum	PGSC0003DMP400019770	4.00E-72	Gene of unknown function
Capsicum annuum	Capang09g001890	0
Capsicum annuum	Capang07g000197	2E-72
Capsicum annuum	Capang01g000312	6E-72
Capsicum annuum	Capana09g002371	0
Capsicum annuum	Capana01g000336	3.00E-72
Capsicum annuum	Capana07g000197	4.00E-72
Capsicum annuum	CA09g01010	0	APO protein 3, mitochondrial, putative
Capsicum annuum	CA07g01970	5.00E-72	APO protein 2, chloroplast, putative
Capsicum annuum	CA01g03450	2.00E-71	At1g64810
Nicotiana benthamiana(v1.01)	Niben101Scf07778g02007.1	0	APO RNA-binding protein [Medicago truncatula]
Nicotiana benthamiana(v1.01)	Niben101Scf07005g00013.1	5.00E-93	APO RNA-binding protein [Medicago truncatula]
Nicotiana benthamiana(v1.01)	Niben101Scf03262g00018.1	2.00E-73	APO RNA-binding protein [Medicago truncatula]
Solanum pennellii	Sopen09g004140.1	0	APO RNA-binding
Solanum pennellii	Sopen08g028600.1	1.00E-74	APO RNA-binding
Solanum pennellii	Sopen07g001670.1	2.00E-70	APO RNA-binding
Petunia axillaris	Peaxi162Scf00290g00510.1	0	Arabidopsis thaliana protein of unknown function (DUF794)
Petunia axillaris	Peaxi162Scf00620g00099.1	3.00E-73	Arabidopsis thaliana protein of unknown function (DUF794)
Petunia axillaris	Peaxi162Scf00401g00618.1	3.00E-72	Arabidopsis thaliana protein of unknown function (DUF794)
Petunia inflata	Peinf101Scf00251g19017.1	0	Arabidopsis thaliana protein of unknown function (DUF794)
Petunia inflata	Peinf101Scf04208g01017.1	3.00E-72	Arabidopsis thaliana protein of unknown function (DUF794)
Petunia inflata	Peinf101Scf00614g02018.1	1.00E-71	Arabidopsis thaliana protein of unknown function (DUF794)

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	molecular_function

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF05634.7	APO_RNA-bind	37	222
PF05634.7	APO_RNA-bind	267	377

Expression pattern

1. Expression trend for Solyc09g009400.2 global RNA-seq network

2. Expression trend for Solyc09g009400.2 tissue preferential conditional network

3. Expression trend for Solyc09g009400.2 stress differential conditional network

4. Expression trend for Solyc09g009400.2 in different samples during fruit ripening

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