Gene detail

Solyc09g072790.2's detail annotation

Phytozome annotation

	RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
CFinderADM000147	RNA binding trehalose biosynthetic process trehalose biosynthesis I Starch_and_sucrose_metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc09g072790.2	SL2.40	phytozomev10	SL2.40ch09	60987196	60990149	-

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc09g072790.2
TATTGCAGTTTCAGTTAGAATACGATTTTGAAGTGTGATTCCCAAATCTGCCCTAAATCTGGAAAAAGAATTGTTCAATTTGATTTTTTTGATCTTCATTTTCCCCAACCCTAGCGATGAATTCCACAAAAGCTTTGTTTACCCACAGAAAATACATACGTAAACTGTAACATTACACAGCAGAAGAGAGATTTTTTTCTTTTTGTTGTTGTTGTTGTTTTTCAGAATTTGAAGAAGATGGATTCCGATGAAGGAAAGCTGTTTGTTGGTGGATTAGGATGGGATATTAAGGAAGATAAGCTAAGAGACTATTTTACCCATTATGGACAAGTTACCCATGCCATAATCATGCGTGACAGGGTTACTGGCTTATCGAGAGGATTCGCGTTTGTTGTCTTCTCCGATCCTTCTGTTATTGATGCCATTCTTCAGGAGAAACACACTATTGATGGCCGTCCGGTAAGTAACATTTCCAATTTCATGATCATCCATATGAATTTTGATGTTTAGCTACAAAATTTGTCGTCTTCAATCTGTCTGTTGCTAATTTCATGTGGGTGTTGGTTTATTTTATCAGTTTTGTACCTGTAGCCTTAAGACTGTTTGGATTGACTTATTGGAAGTGTTTTTTTTTGTGGTGTTTGAAGAAGACAATAAAAAAATGACTTTTTGCTTAAGCTTATATCCTACTTTTAAAAAGCCAATCCAAACACACTCTCAGTCCTTACCATTTTTTACTTTTTAAGATGACATAATACATATCGCCCTTTATCTTGGCTTTAGCCCTTCAATTTTGAATGTGTACAGTTAAACTTGTATAAAATTGAAAAATAAATGCACGTGTCTACCTGACATGCTACACGTGGGACACTACGTATGACGCAAAATTGCAATGTAGGATGAATATGTTTATATAAGTTTAAGTGCTTGCTTGTGGAGACTCGAAGTTAGAGGGAATAGATGTTCGTTGAAACCAAGTTAAAGAACACATTTATGTATTATGCCTTTCAAAATTGATCTCAATTGAGTTTTTTTTTTCCAACTGATTTATGTTTGAATGCTTTCAAAGTTAAGGTTTTCCCATAAGGCAGTTTGGAATTTTGTCATTAGTTGCATCAGGATGTGTTGTGTCTAGGCATTTGCCGTGACTTCAATTTCGTCTCCAAGTGTTTATATAACCTGTGTATTATACCACATTGTCTCTAAATTTGAATCCATTTTTCAGTCAGTTTTTCCAAATGGTGGGTATGATTAATGATGTACACTCCTTTCACTTGTAACTTATCTTTTAGGTTGTTTGATTAAAAGCTGTGCAATGCTTCTGTTGAAACCATCACATTTATGAAGGCAAGGGTAAGGGTAGGGTATTATTTGTTTAGTTTTGCTTTTGCAGGGCAGTGAAGACAAATTTCCTTAGATAATGAAGGATTCTGTTTTTTGTACTTCCCATTTTTTGTAATATATTCATTCAAGGAAAGGACCCAACTTCTGATGATGTGATGTTCACTCTTTTGGGGAACACTGATTAGATGACTTTTTGTTATTCGTTTACATGATGACATCCCACTTGCGCCTATGTTGTCAACTCTATGCAAAGTTAAAGGAGTAATCTGTTAGATTTTCTTGTTCTTTATTGGATATGTTTATCTGAGCCCGAAACCATTCAAAGACATGATATTCTAGTGGATATGCTTGAGTCACATATTCTGAAAGTTCTTAGCAGTGTTTAAAGTTGATGAAAAATCCCGCTTGGCGGCTGTGATGTTGTAGCTTGGCTTCAGCTAAACCACATTGGAATTTCTTGCTGATGAAATGCCTGTTTACTTGTCTGTCTATTTTCACTTTAGACTCAAGTTTTTCCATTCAGGTTGAAGCTAAGAGGGCTTTACCAAGAGCACAACAGCAGAGTTTGAGATCGCGACTTCCTCATGCCAGTGAAGATACAAGACTGGTAATGCGCAATCTCAACAACAGAACGAGAAAAATATTTGTGGGTGGGCTACCTTCATCCCTTACTGAAGAAGAGTTTTGCCAGTACTTCCAAGATTATGGTAATGTGACAGATAAAGTAATTATGTTTGACCCAAACACTGGTCGCCCGCGAGGATTCGGTTTCATCACCTTTGACTCAGAAGATGCTGTTGATAGAGTTCTTCATAAAACCTTTCATGAACTGAAAAATAGGATAGTGGAGGTAAAACGTGCCCTGCCAAAAGAAGCAAATCCCGCTGGCAATAATTATGGTGGAGGTTACCCGGGTTATGGTTCTTCTGATCCCATTAGGTTCCCACAGCCTGCTTTTTGTGGTTACACTCCCTATAACAGCTATGGAGCTCTGAATTATGGTTATGGTTATGGTTATGATCCTTATACTTTCTACGGTGGGGCAGCTAGAGTATATATGAATCCATCTTTGGCCAGCATTGTTTATGGTAACAGCTTGCCTGGTGCCACAAGAAACCAGTGGAGCAGCCAGAATCTTGGGCATGGTGATTTCTATAATTTAAATGCAAGTTATGGCGCTTCTAGTTCGTTGGGTGCTTCATCCACTCGTGGTGTTATTTTGTCATCAACTAGTACATCTCAGGGTCATGCTTCTCAAAACAATAATCAGGGGAATGGTTGCAGTATGTACACAGAAAATGAAGGTCCTATCACTGATTCTGATGGTAACGAGACTGGTGATAGGCATACAGGTAGTGCTCCTCCAAACAGCAGCAGTGGTGAGGCAACTACCCATGCAAATGGGTGCAGTACCACAACAACAGTCTTTGACAGCAGTACTGGTTCTCCAGGGTTTCCTGATGCAGTTTTAGTTTCCGATAAGTAAGAAATTCCGGTTTATTGTGGTTAGACTGAGGGGAATACTAACAGCACTAACCGTATCATTATATTATCAGCTTCTAAGACTCAATCAGAGAAAAAGTAACCCTGTTAACACCACCAGTTTGGTC
Transcript:
Solyc09g072790.2.1
TATTGCAGTTTCAGTTAGAATACGATTTTGAAGTGTGATTCCCAAATCTGCCCTAAATCTGGAAAAAGAATTGTTCAATTTGATTTTTTTGATCTTCATTTTCCCCAACCCTAGCGATGAATTCCACAAAAGCTTTGTTTACCCACAGAAAATACATACGTAAACTGTAACATTACACAGCAGAAGAGAGATTTTTTTCTTTTTGTTGTTGTTGTTGTTTTTCAGAATTTGAAGAAGATGGATTCCGATGAAGGAAAGCTGTTTGTTGGTGGATTAGGATGGGATATTAAGGAAGATAAGCTAAGAGACTATTTTACCCATTATGGACAAGTTACCCATGCCATAATCATGCGTGACAGGGTTACTGGCTTATCGAGAGGATTCGCGTTTGTTGTCTTCTCCGATCCTTCTGTTATTGATGCCATTCTTCAGGAGAAACACACTATTGATGGCCGTCCGGTTGAAGCTAAGAGGGCTTTACCAAGAGCACAACAGCAGAGTTTGAGATCGCGACTTCCTCATGCCAGTGAAGATACAAGACTGGTAATGCGCAATCTCAACAACAGAACGAGAAAAATATTTGTGGGTGGGCTACCTTCATCCCTTACTGAAGAAGAGTTTTGCCAGTACTTCCAAGATTATGGTAATGTGACAGATAAAGTAATTATGTTTGACCCAAACACTGGTCGCCCGCGAGGATTCGGTTTCATCACCTTTGACTCAGAAGATGCTGTTGATAGAGTTCTTCATAAAACCTTTCATGAACTGAAAAATAGGATAGTGGAGGTAAAACGTGCCCTGCCAAAAGAAGCAAATCCCGCTGGCAATAATTATGGTGGAGGTTACCCGGGTTATGGTTCTTCTGATCCCATTAGGTTCCCACAGCCTGCTTTTTGTGGTTACACTCCCTATAACAGCTATGGAGCTCTGAATTATGGTTATGGTTATGGTTATGATCCTTATACTTTCTACGGTGGGGCAGCTAGAGTATATATGAATCCATCTTTGGCCAGCATTGTTTATGGTAACAGCTTGCCTGGTGCCACAAGAAACCAGTGGAGCAGCCAGAATCTTGGGCATGGTGATTTCTATAATTTAAATGCAAGTTATGGCGCTTCTAGTTCGTTGGGTGCTTCATCCACTCGTGGTGTTATTTTGTCATCAACTAGTACATCTCAGGGTCATGCTTCTCAAAACAATAATCAGGGGAATGGTTGCAGTATGTACACAGAAAATGAAGGTCCTATCACTGATTCTGATGGTAACGAGACTGGTGATAGGCATACAGGTAGTGCTCCTCCAAACAGCAGCAGTGGTGAGGCAACTACCCATGCAAATGGGTGCAGTACCACAACAACAGTCTTTGACAGCAGTACTGGTTCTCCAGGGTTTCCTGATGCAGTTTTAGTTTCCGATAAGTAAGAAATTCCGGTTTATTGTGGTTAGACTGAGGGGAATACTAACAGCACTAACCGTATCATTATATTATCAGCTTCTAAGACTCAATCAGAGAAAAAGTAACCCTGTTAACACCACCAGTTTGGTC
CDS:
Solyc09g072790.2.1
ATGGATTCCGATGAAGGAAAGCTGTTTGTTGGTGGATTAGGATGGGATATTAAGGAAGATAAGCTAAGAGACTATTTTACCCATTATGGACAAGTTACCCATGCCATAATCATGCGTGACAGGGTTACTGGCTTATCGAGAGGATTCGCGTTTGTTGTCTTCTCCGATCCTTCTGTTATTGATGCCATTCTTCAGGAGAAACACACTATTGATGGCCGTCCGGTTGAAGCTAAGAGGGCTTTACCAAGAGCACAACAGCAGAGTTTGAGATCGCGACTTCCTCATGCCAGTGAAGATACAAGACTGGTAATGCGCAATCTCAACAACAGAACGAGAAAAATATTTGTGGGTGGGCTACCTTCATCCCTTACTGAAGAAGAGTTTTGCCAGTACTTCCAAGATTATGGTAATGTGACAGATAAAGTAATTATGTTTGACCCAAACACTGGTCGCCCGCGAGGATTCGGTTTCATCACCTTTGACTCAGAAGATGCTGTTGATAGAGTTCTTCATAAAACCTTTCATGAACTGAAAAATAGGATAGTGGAGGTAAAACGTGCCCTGCCAAAAGAAGCAAATCCCGCTGGCAATAATTATGGTGGAGGTTACCCGGGTTATGGTTCTTCTGATCCCATTAGGTTCCCACAGCCTGCTTTTTGTGGTTACACTCCCTATAACAGCTATGGAGCTCTGAATTATGGTTATGGTTATGGTTATGATCCTTATACTTTCTACGGTGGGGCAGCTAGAGTATATATGAATCCATCTTTGGCCAGCATTGTTTATGGTAACAGCTTGCCTGGTGCCACAAGAAACCAGTGGAGCAGCCAGAATCTTGGGCATGGTGATTTCTATAATTTAAATGCAAGTTATGGCGCTTCTAGTTCGTTGGGTGCTTCATCCACTCGTGGTGTTATTTTGTCATCAACTAGTACATCTCAGGGTCATGCTTCTCAAAACAATAATCAGGGGAATGGTTGCAGTATGTACACAGAAAATGAAGGTCCTATCACTGATTCTGATGGTAACGAGACTGGTGATAGGCATACAGGTAGTGCTCCTCCAAACAGCAGCAGTGGTGAGGCAACTACCCATGCAAATGGGTGCAGTACCACAACAACAGTCTTTGACAGCAGTACTGGTTCTCCAGGGTTTCCTGATGCAGTTTTAGTTTCCGATAAGTAA
Protein:
Solyc09g072790.2.1
MDSDEGKLFVGGLGWDIKEDKLRDYFTHYGQVTHAIIMRDRVTGLSRGFAFVVFSDPSVIDAILQEKHTIDGRPVEAKRALPRAQQQSLRSRLPHASEDTRLVMRNLNNRTRKIFVGGLPSSLTEEEFCQYFQDYGNVTDKVIMFDPNTGRPRGFGFITFDSEDAVDRVLHKTFHELKNRIVEVKRALPKEANPAGNNYGGGYPGYGSSDPIRFPQPAFCGYTPYNSYGALNYGYGYGYDPYTFYGGAARVYMNPSLASIVYGNSLPGATRNQWSSQNLGHGDFYNLNASYGASSSLGASSTRGVILSSTSTSQGHASQNNNQGNGCSMYTENEGPITDSDGNETGDRHTGSAPPNSSSGEATTHANGCSTTTTVFDSSTGSPGFPDAVLVSDK*

Gene:

>Solyc09g072790.2

TATTGCAGTTTCAGTTAGAATACGATTTTGAAGTGTGATTCCCAAATCTGCCCTAAATCTGGAAAAAGAATTGTTCAATTTGATTTTTTTGATCTTCATTTTCCCCAACCCTAGCGATGAATTCCACAAAAGCTTTGTTTACCCACAGAAAATACATACGTAAACTGTAACATTACACAGCAGAAGAGAGATTTTTTTCTTTTTGTTGTTGTTGTTGTTTTTCAGAATTTGAAGAAGATGGATTCCGATGAAGGAAAGCTGTTTGTTGGTGGATTAGGATGGGATATTAAGGAAGATAAGCTAAGAGACTATTTTACCCATTATGGACAAGTTACCCATGCCATAATCATGCGTGACAGGGTTACTGGCTTATCGAGAGGATTCGCGTTTGTTGTCTTCTCCGATCCTTCTGTTATTGATGCCATTCTTCAGGAGAAACACACTATTGATGGCCGTCCGGTAAGTAACATTTCCAATTTCATGATCATCCATATGAATTTTGATGTTTAGCTACAAAATTTGTCGTCTTCAATCTGTCTGTTGCTAATTTCATGTGGGTGTTGGTTTATTTTATCAGTTTTGTACCTGTAGCCTTAAGACTGTTTGGATTGACTTATTGGAAGTGTTTTTTTTTGTGGTGTTTGAAGAAGACAATAAAAAAATGACTTTTTGCTTAAGCTTATATCCTACTTTTAAAAAGCCAATCCAAACACACTCTCAGTCCTTACCATTTTTTACTTTTTAAGATGACATAATACATATCGCCCTTTATCTTGGCTTTAGCCCTTCAATTTTGAATGTGTACAGTTAAACTTGTATAAAATTGAAAAATAAATGCACGTGTCTACCTGACATGCTACACGTGGGACACTACGTATGACGCAAAATTGCAATGTAGGATGAATATGTTTATATAAGTTTAAGTGCTTGCTTGTGGAGACTCGAAGTTAGAGGGAATAGATGTTCGTTGAAACCAAGTTAAAGAACACATTTATGTATTATGCCTTTCAAAATTGATCTCAATTGAGTTTTTTTTTTCCAACTGATTTATGTTTGAATGCTTTCAAAGTTAAGGTTTTCCCATAAGGCAGTTTGGAATTTTGTCATTAGTTGCATCAGGATGTGTTGTGTCTAGGCATTTGCCGTGACTTCAATTTCGTCTCCAAGTGTTTATATAACCTGTGTATTATACCACATTGTCTCTAAATTTGAATCCATTTTTCAGTCAGTTTTTCCAAATGGTGGGTATGATTAATGATGTACACTCCTTTCACTTGTAACTTATCTTTTAGGTTGTTTGATTAAAAGCTGTGCAATGCTTCTGTTGAAACCATCACATTTATGAAGGCAAGGGTAAGGGTAGGGTATTATTTGTTTAGTTTTGCTTTTGCAGGGCAGTGAAGACAAATTTCCTTAGATAATGAAGGATTCTGTTTTTTGTACTTCCCATTTTTTGTAATATATTCATTCAAGGAAAGGACCCAACTTCTGATGATGTGATGTTCACTCTTTTGGGGAACACTGATTAGATGACTTTTTGTTATTCGTTTACATGATGACATCCCACTTGCGCCTATGTTGTCAACTCTATGCAAAGTTAAAGGAGTAATCTGTTAGATTTTCTTGTTCTTTATTGGATATGTTTATCTGAGCCCGAAACCATTCAAAGACATGATATTCTAGTGGATATGCTTGAGTCACATATTCTGAAAGTTCTTAGCAGTGTTTAAAGTTGATGAAAAATCCCGCTTGGCGGCTGTGATGTTGTAGCTTGGCTTCAGCTAAACCACATTGGAATTTCTTGCTGATGAAATGCCTGTTTACTTGTCTGTCTATTTTCACTTTAGACTCAAGTTTTTCCATTCAGGTTGAAGCTAAGAGGGCTTTACCAAGAGCACAACAGCAGAGTTTGAGATCGCGACTTCCTCATGCCAGTGAAGATACAAGACTGGTAATGCGCAATCTCAACAACAGAACGAGAAAAATATTTGTGGGTGGGCTACCTTCATCCCTTACTGAAGAAGAGTTTTGCCAGTACTTCCAAGATTATGGTAATGTGACAGATAAAGTAATTATGTTTGACCCAAACACTGGTCGCCCGCGAGGATTCGGTTTCATCACCTTTGACTCAGAAGATGCTGTTGATAGAGTTCTTCATAAAACCTTTCATGAACTGAAAAATAGGATAGTGGAGGTAAAACGTGCCCTGCCAAAAGAAGCAAATCCCGCTGGCAATAATTATGGTGGAGGTTACCCGGGTTATGGTTCTTCTGATCCCATTAGGTTCCCACAGCCTGCTTTTTGTGGTTACACTCCCTATAACAGCTATGGAGCTCTGAATTATGGTTATGGTTATGGTTATGATCCTTATACTTTCTACGGTGGGGCAGCTAGAGTATATATGAATCCATCTTTGGCCAGCATTGTTTATGGTAACAGCTTGCCTGGTGCCACAAGAAACCAGTGGAGCAGCCAGAATCTTGGGCATGGTGATTTCTATAATTTAAATGCAAGTTATGGCGCTTCTAGTTCGTTGGGTGCTTCATCCACTCGTGGTGTTATTTTGTCATCAACTAGTACATCTCAGGGTCATGCTTCTCAAAACAATAATCAGGGGAATGGTTGCAGTATGTACACAGAAAATGAAGGTCCTATCACTGATTCTGATGGTAACGAGACTGGTGATAGGCATACAGGTAGTGCTCCTCCAAACAGCAGCAGTGGTGAGGCAACTACCCATGCAAATGGGTGCAGTACCACAACAACAGTCTTTGACAGCAGTACTGGTTCTCCAGGGTTTCCTGATGCAGTTTTAGTTTCCGATAAGTAAGAAATTCCGGTTTATTGTGGTTAGACTGAGGGGAATACTAACAGCACTAACCGTATCATTATATTATCAGCTTCTAAGACTCAATCAGAGAAAAAGTAACCCTGTTAACACCACCAGTTTGGTC

Transcript:

CDS:

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_31799	0.43	RNA-binding protein-like
Nicotiana tabacum	gene_53785	9.00E-175	RNA-binding protein-like
Nicotiana tabacum	gene_4747	7.00E-05	RNA-binding protein-like
Nicotiana tabacum	gene_9523	7.00E-05	RNA-binding protein-like
Nicotiana tabacum	gene_55359	9.00E-175	RNA-binding protein-like
Nicotiana tabacum	gene_7110	7.00E-05	RNA-binding protein-like
Nicotiana benthamiana(v0.44)	NbS00022422g0001.1	2.00E-146	RNA-binding protein-like (AHRD V1 -- Q8L779_ARATH)
Nicotiana benthamiana(v0.44)	NbS00010610g0013.1	2.00E-153	RNA-binding protein-like (AHRD V1 -- Q8L779_ARATH)
Solanum tuberosum	PGSC0003DMP400006803	0	Nucleic acid binding protein
Solanum tuberosum	PGSC0003DMP400006802	8.00E-123	Conserved gene of unknown function
Solanum tuberosum	PGSC0003DMP400029965	2.00E-65	Non-LTR retroelement reverse transcriptase
Capsicum annuum	Capang03g003362	2E-96
Capsicum annuum	Capana03g003425	1.00E-134
Capsicum annuum	CA03g09470	7.00E-136	PREDICTED: DAZ-associated protein 1-like [Cucumis sativus]
Capsicum annuum	CA04g00670	5.00E-65	PREDICTED: heterogeneous nuclear ribonucleoprotein 27C-like [Solanum lycopersicum]
Nicotiana benthamiana(v1.01)	Niben101Scf05516g02015.1	2.00E-133	RNA-binding protein 1 LENGTH=360
Nicotiana benthamiana(v1.01)	Niben101Scf35572g01005.1	5.00E-113	RNA-binding protein 1 LENGTH=360
Nicotiana benthamiana(v1.01)	Niben101Scf04485g02016.1	6.00E-65	RNA-binding protein 1 LENGTH=360
Solanum pennellii	Sopen09g028570.1	2.00E-170	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Solanum pennellii	Sopen09g033450.1	2.00E-65	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Solanum pennellii	Sopen03g001690.1	7.00E-65	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Petunia axillaris	Peaxi162Scf00415g00526.1	2.00E-108	RNA-binding (RRM/RBD/RNP motifs) family protein
Petunia axillaris	Peaxi162Scf00033g02835.1	7.00E-65	RNA-binding (RRM/RBD/RNP motifs) family protein
Petunia inflata	Peinf101Scf00879g07008.1	1.00E-108	RNA-binding (RRM/RBD/RNP motifs) family protein
Petunia inflata	Peinf101Scf01320g05012.1	4.00E-65	RNA-binding (RRM/RBD/RNP motifs) family protein
Solanum melongena	Sme2.5_00726.1_g00006.1	1.00E-161

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14411	heterogeneous nuclear ribonucleoprotein 1-like		mRNA surveillance pathway	sly03015

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
GO:0003676	nucleic acid binding	molecular_function

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF00076.18	RRM_1	8	74
PF00076.18	RRM_1	114	171

Expression pattern

1. Expression trend for Solyc09g072790.2 global RNA-seq network

2. Expression trend for Solyc09g072790.2 tissue preferential conditional network

3. Expression trend for Solyc09g072790.2 stress differential conditional network

4. Expression trend for Solyc09g072790.2 in different samples during fruit ripening

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