Gene detail

Solyc09g074890.1's detail annotation

Phytozome annotation

ralf-like 33

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
CFinderADM000003	heme binding oxidation-reduction process peroxidase activity response to oxidative stress copper ion binding transferase activity, transferring acyl groups other than amino-acyl groups oxidoreductase activity structural constituent of cell wall oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen plant-type cell wall organization iron ion binding transmembrane transport transport polysaccharide_binding transmembrane_transporter_activity integral to membrane transporter activity response to biotic stimulus cell wall apoplast hyoscyamine and scopolamine biosynthesis baicalein degradation (hydrogen peroxide detoxification) eugenol and isoeugenol biosynthesis N-methyl-Δ¹-pyrrolinium cation biosynthesis superpathway of hyoscyamine and scopolamine biosynthesis volatile benzenoid biosynthesis I (ester formation) Asthma Indole_alkaloid_biosynthesis Tropane,_piperidine_and_pyridine_alkaloid_biosynthesis Pentose_and_glucuronate_interconversions	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc09g074890.1	SL2.40	phytozomev10	SL2.40ch09	62196930	62197286	+

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Top hits annotation

Species	Top Hits	E-value	Annotation
Arabidopsis thaliana	AT1G02900	1.00E-28	RAPID ALKALINIZATION FACTOR 1
Arabidopsis thaliana	AT4G15800	5.00E-30	ralf-like 33
Nicotiana benthamiana(v0.44)	NbS00049111g0001.1	1.00E-58	Rapid alkalinization factor 1 (AHRD V1 **-- Q84UC9_9ROSI)
Capsicum annuum	Capang00g004493	1E-45
Capsicum annuum	Capang03g003510	1E-45
Capsicum annuum	Capang01g004073	2E-29
Capsicum annuum	Capana03g003606	1.00E-45
Capsicum annuum	CA03g08360	1.00E-45	PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
Solanum pennellii	Sopen09g029710.1	1.00E-51	Rapid ALkalinization Factor (RALF)
Petunia axillaris	Peaxi162Scf00067g00252.1	6.00E-34	RALFL33, putative [Ricinus communis] gb\|EEF3515.1\| RALFL33, putative [Ricinus communis]
Petunia axillaris	Peaxi162Scf00037g00921.1	5.00E-31	rapid alkalinization factor 1

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
-	-	-

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF05498.7	RALF	57	117

Expression pattern

1. Expression trend for Solyc09g074890.1 global RNA-seq network

2. Expression trend for Solyc09g074890.1 tissue preferential conditional network

3. Expression trend for Solyc09g074890.1 stress differential conditional network

4. Expression trend for Solyc09g074890.1 in different samples during fruit ripening

TOP