Gene detail

Solyc09g089850.2's detail annotation

Phytozome annotation

	Uncharacterised protein family (UPF0497)

Uncharacterised protein family (UPF0497)

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
TreatCFM001111	Transcription_related, Transcription regulator: C3H Transcription_related, Transcription factor: bZIP	Stress differential network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc09g089850.2	SL2.40	phytozomev10	SL2.40ch09	64832564	64835830	+

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc09g089850.2
CTTGTCCAAAAAGGGTACATTCCTTTGGTAATTCTTGAAGGTGGGGTTGTAGCTATTCTTCAGTTTTTTGTTGGGAAGTTGCTGTAATTGGTAGTTGCTTGATCAAGAATGCTAATTTGTACTTGATTTTGCTTTTAAAATGGTTAAAGAAAGGTTCTTTGGATTTTGGTTTGTTGGGAGTTTGCTTTAAACCTATCAAGAAGTGTAAAAAGTTGATTCAGTTTGAGGAGATAAAATGAAGGACTTTGCTGGCACACCTGGTACTTTAACTGGACTTTTTCTGAGGATGGGTCAGTGCTTTTTTGCTGCTGGTGCAATTGCCTCAATGGTTACCTCTAAAGGTTTCTTCAATGTCACTGCTTTTTGGTACTTCTTCATTTCCTTTTCTCAATTTTGCAATTATTTTTGTTAGTGTTAGTTACTGGTATTGATTAATTAATTTGAAGTTTCTGGGATGAATGAAGATCAAGATTCAAGTTTTATTCTGTTGTTGGGAATAGATTGTGGTGTGGCATTTCTTTGTTATCTGATTAATCCTAGAATTTCTTTATTTGTTGCTGACAATAACATATGCAGCTAGAAGAAAATTACGGAAAAATGAGTCTTCAAAAGTCTTTTAACATACTTATTGTTGTGCCAGCAACTGTTTGTAATGTTTTCCTACATGAATATGATATTTGGATTTAGGGTCTAAGCTGAACAAAGATACATGTGTAATCAACTAAGTCAGTTCTCTTTCCTTTGAAATTTTGATGCAGTTCTTGTCATTGTTCTGCTAGTTTGTAAGGTGCGAGAAGAGTGTTTACCTTGTTAATCTTTATAAAGTCCAGTGTAGAAGAAGGAAGTCTAGAACCGGTAAATGTTTGTTGTGTTTCAAATCCTTCATGATCACCAAGGTCTAAAACCTTAGAAAGCTCAGCTCTGTCCTTGCTATTTCTTTCCTCAAGGACAATCAACAAAGCAATTCATATATCGATCAACACCTCAATCCTAAATTAATTGGGGCTGCCTCTACTCTATTTGTCCTGCTCTATTCAAGGATTCATCTTAGTTTGACTATATTTACAATGAGTGTCAACCTAGCTCTCCTCCTTTATCCAAGCTTTGGATGGGCTATGTTTTGCAAAGCTCACCTTGGCAAAATTAACAAAGAATTTGTACTCATACCTTGTATCTCTATAGTTCTTTTCTTCAACCTTCTCATCTGAAAATCACTACTAGAGTATTATACATCTGATCTAGGCGTCTAACCATGAAATTCACCTCCTGAGCTAGAAGTTTAAGCAATAGTGTACCAGTGTTCTTAAAGGCAAGCGCCTCTCGCCAAAGGCGACGAGGCGTGGCGAGGCAATGGGGCTGCACCTATTTCCAGCAAGGCGTGGCGAGGTCAAAGAGGCAAGCCAAGGCGAGTGGTGACGTGGAATTGGCGAGAGGCGATTGAACTTGTAATAGTATCCTCTGTGTCTTAATCCAGTTAAAATGTTTGTTGTTTGATCCAACAAGGGAGAGATAGCCAAGTGGAAGGGGTAATACACTAACAACCATGAGGTCAGGGGGGTTCAAGTCGCGATGGGGCAAACTAGGAAAAGCCGCTCTTTGGCTCCTCAGTAGTGAGTTTTGAGGATGGGGTTCACGGTATCAGGAAGGAAAAAATTTGTTCTTTTGATCCAAGTGACTACTAGCTATAGAGCCTTATAAATGTCCAAACTGATGCCTAAACGTTATTAAAGTCGTCGCTGGCCTTTTAAAAATCATTGTATGCCTATGTATATCCAATGAAATGAAATGTGCCTTGTCCTTTTCTGGCATAATGTCCTCGGCAGACCTAATCTAAAAGCACTTACAGTATTTGACTTTAGAGATGACTCCATACCGAGCAGTTTAGTTCTTAATCATGCATGAATTCTAGCTGTCATTTTCTAAACACCTCCTATTACTCTGATTCCAAATGCTCCTGAAAATAGCAGCAGGGATCATTAACCAAATCCTTTTGATGGTTTCATCTTCTCTCAGCATGCTCCAGTTCATATGTGTGTGTTTTATGGTCTGTGGCATGACCGTTGTCAACCCAATAATGCATAAGAACATGTTCCAAAGATCAGAAAGCACCGATGCGTGAATAAAGCATTAAAATTTAGTGAAGGGATAAAAGGTTCTAAAATGTCTTTTTGACGCGTATAAGGCTTGACATGGATCATTCAATCGAGTCTTTAGCCTCTACTTCTTTTCAACCAATATTTTTTTAGTGAAAACACTATACAAAAAGAGAAGACTAATGGCTATTTCATAACCTCGGGACTCCTTATGTCTTGCAGCAAGTGTTCTCCCTTGAACTATAAACTAGCTTCTCTTCATTTTGCAAGTTATAACATATTAAAAGACACCAGTGCCTCATGCATGTCTTGCATTCTGTCGACATGTCGAATTGATTGCTCTGTCATTTTCCAAGATTTTAGCATTCTTATAAAACTAAAACATTAAAATTTGATGGCTTCCATATACATGTCATTATTGCAGCTACTTAATAGCCTCAATGGCTTTGCAAGTCATCTGGAGCTTCGGACTTGCGTTCTTTGATGCCTATTTCTTGGCAAAGAAGAAGTCTTTTCACAATCATGTTTTACTGAGCCTCTTCGTAGTTGGAGACTGGGTTAGTCTCTGCTGTATAACAGTATTCTTTAATAGTACACAACAAACTTATCGTTTACTAATTATCTGTTATCGATCTCTCTGGGATGAATCTACTTGCAGTGTACAGGATTACTATCGCTCGCTGCAGCTGCTTCTTCAGCTGGTGTCACCGTGTTGTACTTTCATGACTTGGGAAGTTGCAGTTTCGGCGAGGAATGCACCAAGTTCCAGTTATCCGTTGCATTTGCTTTCCTGAGTTGGATATCGATTCTTATATCTTCTCTAATTATGTTTTGGATATGGGCTGCCGGTTAGACGACTCAACAGGGTGCTGCATTCATATGTTGCCGCTGTATTTCGTCACTGTCCAATTTTTGAAGTGTTAATAGGGGGGAAAATTAGGAAAAAAGAGTGTTCATTTTGTATACTTATACTCCAGCATACATATTTTCCTTTCCTCATCCATACAGCAGAAACTGTAATCGATCACTTGAAGGTAATTGAGGAAGATTTTTTTTGGTCCTGCACCTTTACTCAACAGTGTTCATGGATCATAGTTATGTTGATTTGCTTTGTAACTATCTGAGTAGTGTCTACCGGAGCGGATGTTTGATAAATGCCAGTTTATGTGTTCAA
Transcript:
Solyc09g089850.2.1
CTTGTCCAAAAAGGGTACATTCCTTTGGTAATTCTTGAAGGTGGGGTTGTAGCTATTCTTCAGTTTTTTGTTGGGAAGTTGCTGTAATTGGTAGTTGCTTGATCAAGAATGCTAATTTGTACTTGATTTTGCTTTTAAAATGGTTAAAGAAAGGTTCTTTGGATTTTGGTTTGTTGGGAGTTTGCTTTAAACCTATCAAGAAGTGTAAAAAGTTGATTCAGTTTGAGGAGATAAAATGAAGGACTTTGCTGGCACACCTGGTACTTTAACTGGACTTTTTCTGAGGATGGGTCAGTGCTTTTTTGCTGCTGGTGCAATTGCCTCAATGGTTACCTCTAAAGGTTTCTTCAATGTCACTGCTTTTTGCTACTTAATAGCCTCAATGGCTTTGCAAGTCATCTGGAGCTTCGGACTTGCGTTCTTTGATGCCTATTTCTTGGCAAAGAAGAAGTCTTTTCACAATCATGTTTTACTGAGCCTCTTCGTAGTTGGAGACTGGTGTACAGGATTACTATCGCTCGCTGCAGCTGCTTCTTCAGCTGGTGTCACCGTGTTGTACTTTCATGACTTGGGAAGTTGCAGTTTCGGCGAGGAATGCACCAAGTTCCAGTTATCCGTTGCATTTGCTTTCCTGAGTTGGATATCGATTCTTATATCTTCTCTAATTATGTTTTGGATATGGGCTGCCGGTTAGACGACTCAACAGGGTGCTGCATTCATATGTTGCCGCTGTATTTCGTCACTGTCCAATTTTTGAAGTGTTAATAGGGGGGAAAATTAGGAAAAAAGAGTGTTCATTTTGTATACTTATACTCCAGCATACATATTTTCCTTTCCTCATCCATACAGCAGAAACTGTAATCGATCACTTGAAGGTAATTGAGGAAGATTTTTTTTGGTCCTGCACCTTTACTCAACAGTGTTCATGGATCATAGTTATGTTGATTTGCTTTGTAACTATCTGAGTAGTGTCTACCGGAGCGGATGTTTGATAAATGCCAGTTTATGTGTTCAA
CDS:
Solyc09g089850.2.1
ATGAAGGACTTTGCTGGCACACCTGGTACTTTAACTGGACTTTTTCTGAGGATGGGTCAGTGCTTTTTTGCTGCTGGTGCAATTGCCTCAATGGTTACCTCTAAAGGTTTCTTCAATGTCACTGCTTTTTGCTACTTAATAGCCTCAATGGCTTTGCAAGTCATCTGGAGCTTCGGACTTGCGTTCTTTGATGCCTATTTCTTGGCAAAGAAGAAGTCTTTTCACAATCATGTTTTACTGAGCCTCTTCGTAGTTGGAGACTGGTGTACAGGATTACTATCGCTCGCTGCAGCTGCTTCTTCAGCTGGTGTCACCGTGTTGTACTTTCATGACTTGGGAAGTTGCAGTTTCGGCGAGGAATGCACCAAGTTCCAGTTATCCGTTGCATTTGCTTTCCTGAGTTGGATATCGATTCTTATATCTTCTCTAATTATGTTTTGGATATGGGCTGCCGGTTAG
Protein:
Solyc09g089850.2.1
MKDFAGTPGTLTGLFLRMGQCFFAAGAIASMVTSKGFFNVTAFCYLIASMALQVIWSFGLAFFDAYFLAKKKSFHNHVLLSLFVVGDWCTGLLSLAAAASSAGVTVLYFHDLGSCSFGEECTKFQLSVAFAFLSWISILISSLIMFWIWAAG*

Gene:

>Solyc09g089850.2

CTTGTCCAAAAAGGGTACATTCCTTTGGTAATTCTTGAAGGTGGGGTTGTAGCTATTCTTCAGTTTTTTGTTGGGAAGTTGCTGTAATTGGTAGTTGCTTGATCAAGAATGCTAATTTGTACTTGATTTTGCTTTTAAAATGGTTAAAGAAAGGTTCTTTGGATTTTGGTTTGTTGGGAGTTTGCTTTAAACCTATCAAGAAGTGTAAAAAGTTGATTCAGTTTGAGGAGATAAAATGAAGGACTTTGCTGGCACACCTGGTACTTTAACTGGACTTTTTCTGAGGATGGGTCAGTGCTTTTTTGCTGCTGGTGCAATTGCCTCAATGGTTACCTCTAAAGGTTTCTTCAATGTCACTGCTTTTTGGTACTTCTTCATTTCCTTTTCTCAATTTTGCAATTATTTTTGTTAGTGTTAGTTACTGGTATTGATTAATTAATTTGAAGTTTCTGGGATGAATGAAGATCAAGATTCAAGTTTTATTCTGTTGTTGGGAATAGATTGTGGTGTGGCATTTCTTTGTTATCTGATTAATCCTAGAATTTCTTTATTTGTTGCTGACAATAACATATGCAGCTAGAAGAAAATTACGGAAAAATGAGTCTTCAAAAGTCTTTTAACATACTTATTGTTGTGCCAGCAACTGTTTGTAATGTTTTCCTACATGAATATGATATTTGGATTTAGGGTCTAAGCTGAACAAAGATACATGTGTAATCAACTAAGTCAGTTCTCTTTCCTTTGAAATTTTGATGCAGTTCTTGTCATTGTTCTGCTAGTTTGTAAGGTGCGAGAAGAGTGTTTACCTTGTTAATCTTTATAAAGTCCAGTGTAGAAGAAGGAAGTCTAGAACCGGTAAATGTTTGTTGTGTTTCAAATCCTTCATGATCACCAAGGTCTAAAACCTTAGAAAGCTCAGCTCTGTCCTTGCTATTTCTTTCCTCAAGGACAATCAACAAAGCAATTCATATATCGATCAACACCTCAATCCTAAATTAATTGGGGCTGCCTCTACTCTATTTGTCCTGCTCTATTCAAGGATTCATCTTAGTTTGACTATATTTACAATGAGTGTCAACCTAGCTCTCCTCCTTTATCCAAGCTTTGGATGGGCTATGTTTTGCAAAGCTCACCTTGGCAAAATTAACAAAGAATTTGTACTCATACCTTGTATCTCTATAGTTCTTTTCTTCAACCTTCTCATCTGAAAATCACTACTAGAGTATTATACATCTGATCTAGGCGTCTAACCATGAAATTCACCTCCTGAGCTAGAAGTTTAAGCAATAGTGTACCAGTGTTCTTAAAGGCAAGCGCCTCTCGCCAAAGGCGACGAGGCGTGGCGAGGCAATGGGGCTGCACCTATTTCCAGCAAGGCGTGGCGAGGTCAAAGAGGCAAGCCAAGGCGAGTGGTGACGTGGAATTGGCGAGAGGCGATTGAACTTGTAATAGTATCCTCTGTGTCTTAATCCAGTTAAAATGTTTGTTGTTTGATCCAACAAGGGAGAGATAGCCAAGTGGAAGGGGTAATACACTAACAACCATGAGGTCAGGGGGGTTCAAGTCGCGATGGGGCAAACTAGGAAAAGCCGCTCTTTGGCTCCTCAGTAGTGAGTTTTGAGGATGGGGTTCACGGTATCAGGAAGGAAAAAATTTGTTCTTTTGATCCAAGTGACTACTAGCTATAGAGCCTTATAAATGTCCAAACTGATGCCTAAACGTTATTAAAGTCGTCGCTGGCCTTTTAAAAATCATTGTATGCCTATGTATATCCAATGAAATGAAATGTGCCTTGTCCTTTTCTGGCATAATGTCCTCGGCAGACCTAATCTAAAAGCACTTACAGTATTTGACTTTAGAGATGACTCCATACCGAGCAGTTTAGTTCTTAATCATGCATGAATTCTAGCTGTCATTTTCTAAACACCTCCTATTACTCTGATTCCAAATGCTCCTGAAAATAGCAGCAGGGATCATTAACCAAATCCTTTTGATGGTTTCATCTTCTCTCAGCATGCTCCAGTTCATATGTGTGTGTTTTATGGTCTGTGGCATGACCGTTGTCAACCCAATAATGCATAAGAACATGTTCCAAAGATCAGAAAGCACCGATGCGTGAATAAAGCATTAAAATTTAGTGAAGGGATAAAAGGTTCTAAAATGTCTTTTTGACGCGTATAAGGCTTGACATGGATCATTCAATCGAGTCTTTAGCCTCTACTTCTTTTCAACCAATATTTTTTTAGTGAAAACACTATACAAAAAGAGAAGACTAATGGCTATTTCATAACCTCGGGACTCCTTATGTCTTGCAGCAAGTGTTCTCCCTTGAACTATAAACTAGCTTCTCTTCATTTTGCAAGTTATAACATATTAAAAGACACCAGTGCCTCATGCATGTCTTGCATTCTGTCGACATGTCGAATTGATTGCTCTGTCATTTTCCAAGATTTTAGCATTCTTATAAAACTAAAACATTAAAATTTGATGGCTTCCATATACATGTCATTATTGCAGCTACTTAATAGCCTCAATGGCTTTGCAAGTCATCTGGAGCTTCGGACTTGCGTTCTTTGATGCCTATTTCTTGGCAAAGAAGAAGTCTTTTCACAATCATGTTTTACTGAGCCTCTTCGTAGTTGGAGACTGGGTTAGTCTCTGCTGTATAACAGTATTCTTTAATAGTACACAACAAACTTATCGTTTACTAATTATCTGTTATCGATCTCTCTGGGATGAATCTACTTGCAGTGTACAGGATTACTATCGCTCGCTGCAGCTGCTTCTTCAGCTGGTGTCACCGTGTTGTACTTTCATGACTTGGGAAGTTGCAGTTTCGGCGAGGAATGCACCAAGTTCCAGTTATCCGTTGCATTTGCTTTCCTGAGTTGGATATCGATTCTTATATCTTCTCTAATTATGTTTTGGATATGGGCTGCCGGTTAGACGACTCAACAGGGTGCTGCATTCATATGTTGCCGCTGTATTTCGTCACTGTCCAATTTTTGAAGTGTTAATAGGGGGGAAAATTAGGAAAAAAGAGTGTTCATTTTGTATACTTATACTCCAGCATACATATTTTCCTTTCCTCATCCATACAGCAGAAACTGTAATCGATCACTTGAAGGTAATTGAGGAAGATTTTTTTTGGTCCTGCACCTTTACTCAACAGTGTTCATGGATCATAGTTATGTTGATTTGCTTTGTAACTATCTGAGTAGTGTCTACCGGAGCGGATGTTTGATAAATGCCAGTTTATGTGTTCAA

Transcript:

CDS:

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_2953	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana tabacum	gene_81699	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana tabacum	gene_78333	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana tabacum	gene_86811	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana tabacum	gene_79860	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana tabacum	gene_2606	2.00E-89	UPF0497 membrane protein At3g23200
Nicotiana benthamiana(v0.44)	NbS00005801g0010.1	4.00E-77	UPF0497 membrane protein At3g23200 (AHRD V1 ***- U497J_ARATH)
Nicotiana benthamiana(v0.44)	NbS00060991g0004.1	7.00E-76	UPF0497 membrane protein At3g23200 (AHRD V1 ***- U497J_ARATH)
Solanum tuberosum	PGSC0003DMP400030118	3.00E-57	Serine-threonine protein kinase, plant-type
Capsicum annuum	Capang09g001273	8E-34
Capsicum annuum	Capang03g004328	8E-34
Capsicum annuum	Capang10g001170	6E-33
Capsicum annuum	Capana03g004494	4.00E-59
Capsicum annuum	CA00g06710	8.00E-34	PREDICTED: CASP-like protein At3g53850-like [Solanum tuberosum]
Capsicum annuum	CA03g05570	1.00E-33	PREDICTED: CASP-like protein At3g23200-like [Solanum lycopersicum]
Capsicum annuum	CA10g05070	6.00E-33	PREDICTED: CASP-like protein At3g53850-like [Solanum tuberosum]
Nicotiana benthamiana(v1.01)	Niben101Scf02063g03021.1	5.00E-57	CASP-like protein 5A1
Solanum pennellii	Sopen09g032790.1	4.00E-62	Domain of unknown function (DUF588)
Petunia axillaris	Peaxi162Scf00024g02318.1	1.00E-56	CASP-like protein
Petunia axillaris	Peaxi162Scf00330g01217.1	6.00E-34	CASP-like protein
Petunia axillaris	Peaxi162Scf00584g00013.1	9.00E-34	CASP-like protein
Petunia inflata	Peinf101Scf00208g01015.1	1.00E-56	CASP-like protein

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
-	-	-

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF04535.8	DUF588	8	136

Expression pattern

1. Expression trend for Solyc09g089850.2 global RNA-seq network

2. Expression trend for Solyc09g089850.2 tissue preferential conditional network

3. Expression trend for Solyc09g089850.2 stress differential conditional network

4. Expression trend for Solyc09g089850.2 in different samples during fruit ripening

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