Gene detail

Solyc12g009220.1's detail annotation

Phytozome annotation

	jasmonate-zim-domain protein 1

jasmonate-zim-domain protein 1

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	Solyc01g096050.2 Solyc03g110950.1 Solyc05g050560.1 Solyc07g042170.2 Solyc10g086380.1 Solyc11g011260.1 Solyc07g042170.2 Solyc04g049800.2
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
CFinderADM000237	Cytochrome P450: CYP94B Transcription factor: Tify iron ion binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen heme binding Cytochrome P450: CYP74A Transcription factor: MYB	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc12g009220.1	SL2.40	phytozomev10	SL2.40ch12	2502555	2504617	+

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Gene:
>Solyc12g009220.1
ATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAG
Transcript:
Solyc12g009220.1.1
ATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAG
CDS:
Solyc12g009220.1.1
ATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAG
Protein:
Solyc12g009220.1.1
MGSSENMDSGKVTGQKSQFSQTCNLLSQFLKKKGSVGDLNNLGIYKTTFESTGSQQTATTTTTTMNLLPMIEKSSDSSSSSSSVETNPQKPMNLFPQEFDFSKEQSTKKTESWKPDQPEKAQMTIFYGGQVIVFDDFPADKANEIMKLANKQNPTNNFTYPMIKNQKTADQSGVSFGNKLIQELPKLSMPQPSVADLPIARRNSLTRFLEKRKDRVTSIAPYQISNNKKSKNEDNKAWLGLGAQFVKTEQYF*

Gene:

>Solyc12g009220.1

ATGGGGTCATCGGAAAATATGGATTCCGGCAAGGTGACCGGACAGAAATCTCAGTTTTCTCAGACTTGTAACCTTTTGAGTCAATTCTTGAAGAAAAAAGGTTCTGTTGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGTATGTTCTTTTTTAAATTTTTTTTTGAACTTTATTTATGTTTTTATGAATCATTATTTGCTATTATAATGTTTTTGGTTGTAAAGATTGAAGCTTTATTGGTTTTGGGAGTATGTATTCATGTTTCTTGTTGCAAAGATAGTACTCTGGTTGGTTTTGTGAAACTTTTCGAGTTTCGAGATTTGAATAAGCGTATGTTTGACCGTAAAGTTTTCATATATCTTTTAATTATTTTGAGTTATAGTAAACTTTATAAATTTCATTTTAAAAACTCTATAGATTCCGGGCATAAGTTCTCGGTCAAACTTAAACTATTTGGCTTTTAGAAAACGAACGGTGTCACGTAAATTGAGACGAGAAAAACTGTTTTTGGTTGTTGAAAGGATTTGTTCATGTTTCTGGTTGCAAGATTGTAGCTTTTTTGGTTTTGGGGAGTATATGTTCATGTTTGTTGTTGCAAAGATTGTAGCTTTTGGGATTTTTGAAAGGATTTTTTCATGTTTATGGTTGCAAAGATTGTAGCTTTTGGGTTTTCTTTGAAGTATTTATTGTTCGAAAACAACCTCTCTGTCTGTTAAGATCTGTGTATAATCTATTCTTCCTATAGCACCTAGCGAGATTTCACTGGGTATATTGTTGTTGTATTTTTGGTTGCAATGACTTAGAGTAGGTTTGGTCGTAGATTTTGAAGTTGAAACTTTTGAGTTTTTGAAGTTTTGTTTGGATGCGTGTTTTACTTGAAACTAATTGAAGTGTTGTGAGAGAAAGAAGAAAGTCCGGGATTAGTTTTTGGAAACTTGAAAATATTCGAAGATCTGATAATATTTCATAATCAAGTAGATATTTGACGATTAAATTTCAAAATCTATGTTTTTGTTGCAAAGATGTGTCACAAGTCTATTAACAAGTTCGACATAACTCAATAATTTTGGTTAAAACTTTTTATTTGTGTTTAATTTTTTTACTTAATATGTAAATAGTACTAATTAATAGAACATTAAACTATCTTTTCTGAACTTCATAACTCATAAAATCGAAATCCTAACTCCGCCTCTCCCTTTTTGGTTTTTAGAAGTAGTTTTTCATGTTTCTAAATCCAAAGAGCTACTAGTTTGTCTACAAGTTCGACACAGCTCAATAGCTTTGATCTAAACTTAAAAACTTTAAAACACAAATCTCGAAAATCCTCATAAACTCGAAATTCTAATTCTGCTATGTTCTTTATGTTTCTGGTTACAAAGATTGTAATTTTTTGTGTTTTGGTTTATGAAACTGATTGAACTTTCCATGTTTCTTGAAAACAGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGTTACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTTGATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGTCATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGATCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTTGCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTCCAACAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATATTTCTAG

Transcript:

CDS:

Protein:

Top hits annotation

Species	Top Hits	E-value	Annotation
Arabidopsis thaliana	AT1G74950	3.00E-28	JASMONATE-ZIM-DOMAIN PROTEIN 2
Nicotiana tabacum	gene_46492	7.00E-99	Jasmonate ZIM-domain protein 1
Nicotiana tabacum	gene_63807	6.00E-44	Jasmonate ZIM-domain protein 1
Nicotiana tabacum	gene_63488	2.00E-98	Jasmonate ZIM-domain protein 1
Nicotiana tabacum	gene_3474	7.00E-99	Jasmonate ZIM-domain protein 1
Nicotiana tabacum	gene_6879	2.00E-98	Jasmonate ZIM-domain protein 1
Nicotiana tabacum	gene_57078	7.00E-99	Jasmonate ZIM-domain protein 1
Nicotiana benthamiana(v0.44)	NbS00001700g0012.1	9.00E-92	Jasmonate ZIM-domain protein 1 (AHRD V1 **-- A7XXZ0_SOLLC)
Nicotiana benthamiana(v0.44)	NbS00044037g0002.1	6.00E-95	Jasmonate ZIM-domain protein 1 (AHRD V1 **-- A7XXZ0_SOLLC)
Capsicum annuum	Capang09g000139	2E-78
Capsicum annuum	Capang07g000806	1E-50
Capsicum annuum	Capana09g000144	2.00E-78
Capsicum annuum	Capana07g000750	2.00E-50
Capsicum annuum	CA09g17240	2.00E-78	Jasmonate ZIM-domain protein 1
Capsicum annuum	CA00g48500	2.00E-50	PnFL-2
Nicotiana benthamiana(v1.01)	Niben101Scf34602g00003.1	1.00E-72	jasmonate-zim-domain protein 1 LENGTH=253
Nicotiana benthamiana(v1.01)	Niben101Scf00298g01006.1	7.00E-72	jasmonate-zim-domain protein 1 LENGTH=253
Nicotiana benthamiana(v1.01)	Niben101Scf16657g00010.1	6.00E-51	jasmonate-zim-domain protein 1 LENGTH=253
Solanum pennellii	Sopen12g004170.1	1.00E-120	tify domain
Solanum pennellii	Sopen07g021770.1	3.00E-51	tify domain
Petunia axillaris	Peaxi162Scf00928g00130.1	2.00E-74	jasmonate ZIM-domain protein 1 [Nicotiana tabacum]
Petunia axillaris	Peaxi162Scf00533g00059.1	5.00E-50	jasmonate ZIM-domain protein 3 [Nicotiana tabacum]
Petunia inflata	Peinf101Scf03816g00028.1	2.00E-75	jasmonate ZIM-domain protein 1 [Nicotiana tabacum]
Petunia inflata	Peinf101Ctg13655775g00003.1	5.00E-59	jasmonate ZIM-domain protein 1 [Nicotiana tabacum]
Petunia inflata	Peinf101Scf03815g00017.1	8.00E-56	jasmonate ZIM-domain protein 1 [Nicotiana tabacum]
Solanum melongena	Sme2.5_01200.1_g00003.1	2.00E-99

Gene family

Gene family	Subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13464	jasmonate ZIM-domain protein 1		Plant hormone signal transduction	sly04075

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF06200.10	tify	117	150
PF09425.6	CCT_2	198	223

Expression pattern

1. Expression trend for Solyc12g009220.1 global RNA-seq network

2. Expression trend for Solyc12g009220.1 tissue preferential conditional network

3. Expression trend for Solyc12g009220.1 stress differential conditional network

4. Expression trend for Solyc12g009220.1 in different samples during fruit ripening

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