Gene detail

Solyc12g088930.1's detail annotation

Phytozome annotation

Protein of unknown function, DUF617

Network

Network Category	Global Network	Tissue Preferential Network	Stress differential network
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist	Top300 PCC genelist
PPI relationship	null
miRNA-target relationship	null

Functional module

Module ID	Function Annotation	Category
CFinderADM000439	hydrolase activity, acting on ester bonds triacylglycerol degradation Vitamin_digestion_and_absorption	global network

Location information

Gene	Assembly	Sources	Chr	Start	End	Strand
Solyc12g088930.1	SL2.40	phytozomev10	SL2.40ch12	62564010	62564834	+

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Sequences

Top hits annotation

Species	Top Hits	E-value	Annotation
Nicotiana tabacum	gene_50278	3.00E-67	Plant-specific domain TIGR01570 family protein
Nicotiana tabacum	gene_49617	2.00E-133	Plant-specific domain TIGR01570 family protein
Nicotiana benthamiana(v0.44)	NbS00019394g0008.1	4.00E-126	Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U390_MAIZE)
Nicotiana benthamiana(v0.44)	NbS00013254g0002.1	9.00E-115	Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U390_MAIZE)
Solanum tuberosum	PGSC0003DMP400027106	6.00E-123	Transposon MuDR mudrA
Capsicum annuum	Capang12g000574	1E-119
Capsicum annuum	Capana00g000063	9.00E-98
Capsicum annuum	Capana00g000524	8.00E-90
Capsicum annuum	CA12g16920	9.00E-98	PREDICTED: protein MIZU-KUSSEI 1-like [Solanum tuberosum]
Nicotiana benthamiana(v1.01)	Niben101Scf00219g03003.1	1.00E-99	Protein of unknown function, DUF617 LENGTH=238
Nicotiana benthamiana(v1.01)	Niben101Scf10412g02021.1	4.00E-90	Protein of unknown function, DUF617 LENGTH=238
Solanum pennellii	Sopen12g030830.1	2.00E-128	Protein of unknown function, DUF617
Petunia axillaris	Peaxi162Scf00064g00021.1	7.00E-95	Protein of unknown function, DUF617
Petunia inflata	Peinf101Scf00471g18001.1	2.00E-95	Protein of unknown function, DUF617
Solanum melongena	Sme2.5_00670.1_g00006.1	1.00E-96

Gene family

Gene family	Subfamily
-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
-	-	-	-	-

PlantCyC

Enzyme ID	Description	Pathway	Pathway id
-	-	-	-

Gene Ontology

GO term	Description	Category
-	-	-

Pfam Domain

Pfam accession	Pfam name	Alignment start	Alignment end
PF04759.9	DUF617	107	272

Expression pattern

1. Expression trend for Solyc12g088930.1 global RNA-seq network

2. Expression trend for Solyc12g088930.1 tissue preferential conditional network

3. Expression trend for Solyc12g088930.1 stress differential conditional network

4. Expression trend for Solyc12g088930.1 in different samples during fruit ripening

TOP