sly-miR319a's network
Export  
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Transcription_related, Transcription factor: MYB0.000888689gene family
Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase0.045274334gene family
Transcription_related, Transcription factor: TCP0.045274334gene family
mRNA guanylyltransferase activity0.007919721GO:0004484
7-methylguanosine mRNA capping0.005205642GO:0006370
mRNA surveillance pathway0.014248434KEGG

miiRNA targets

Gene IDExpectionAlign sequence(miRNA-target)Annotation
Solyc01g008770.22
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   *||*=||||||||||=|||| 
 targets:2963UGACUUCCCUUCAGUUCAAG2982
Rho GTPase activation protein (RhoGAP) with PH domain
Solyc01g009070.22.5
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   |||||||||||||*|||||* 
 targets:3571GGAGCUCCCUUCACUCCAAA3590
myb domain protein 65
Solyc02g079010.22.5
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   ||||||=|*||||||||||* 
 targets:384GGAGCUUCAUUCAGUCCAAA403
Protein of unknown function (DUF761)
Solyc06g073640.22.5
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   *||||||||||||*|||||* 
 targets:3564CGAGCUCCCUUCACUCCAAA3583
myb domain protein 65
Solyc09g009340.12.5
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   **|||||||||=|||=|=|| 
 targets:5613AAAGCUCCCUUUAGUUCGAG5632
DNA repair and meiosis protein (Mre11)
Solyc12g096420.12.5
 ncRNA:20CCUCGAGGGAAGUCAGGUUC1
   *||||||*=||||||||||* 
 targets:2563UGAGCUCAUUUCAGUCCAAA2582
RING/U-box superfamily protein

4.Expression profilings


Show details about miRNA target functional module gene expression profiling
TOP

Maintained by Jiajie She in Zhen Su's Lab | China Agricultural University
© 2017 All Rights Reserved.