sly-miR396b's network
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Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Transcription_related, Transcription factor: GRF5.30E-09gene family
nucleus0.001495265GO:0005634
transcription, DNA-dependent0.000256238GO:0006351
regulation of transcription, DNA-dependent0.022544074GO:0006355
developmental_process8.07E-09GO:0032502

miiRNA targets

Gene IDExpectionAlign sequence(miRNA-target)Annotation
Solyc01g009010.22
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   **||||=||||||||*||||| 
 targets:2630UUGUUCGAGAAAGCUUUGGAA2650
4-(cytidine 5\'-phospho)-2-C-methyl-D-erithritol kinase
Solyc02g062740.22
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   |=|*|||=||||||||||||= 
 targets:7803AGGAUCAGGAAAGCUGUGGAG7823
domains rearranged methyltransferase 2
Solyc02g071230.12.5
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   |**||==|||=|||||||||| 
 targets:6070AUCUUUGAGAGAGCUGUGGAA6090
Tetratricopeptide repeat (TPR)-like superfamily protein
Solyc03g110900.22.5
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   |||*||||||*||=||||||| 
 targets:17519AAGGUCAAGACAGUUGUGGAA17539
AAA-type ATPase family protein
Solyc05g054840.22.5
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   *|*||||||||||||*||||| 
 targets:681CAUUUCAAGAAAGCUUUGGAA701
Solyc11g062310.12.5
 ncRNA:21UUCAAGUUCUUUCGACACCUU1
   |=|||*|||||||*|||||=| 
 targets:1788AGGUUAAAGAAAGAUGUGGGA1808
ARM repeat superfamily protein

4.Expression profilings


Show details about miRNA target functional module gene expression profiling
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Maintained by Jiajie She in Zhen Su's Lab | China Agricultural University
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