CFinderADM000135 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| ribonuclease III activity | 0.041192991 | GO:0004525 |
| cytokinin-O-glucosides biosynthesis | 0.02308116 | plantCyc |
| Proteoglycans_in_cancer | 0.045271647 | KEGG |
| Zeatin_biosynthesis | 0.045271647 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g014450.1 | dicer-like 2 | AT3G03300 (3.00E-28) |
| Solyc01g016830.1 | ||
| Solyc01g056960.1 | ||
| Solyc03g096200.1 | UDP-Glycosyltransferase superfamily protein | |
| Solyc04g015780.1 | ||
| Solyc05g050080.1 | Reverse transcriptase (RNA-dependent DNA polymerase) | |
| Solyc07g017850.1 | ||
| Solyc07g018150.1 | ||
| Solyc07g026790.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000004 | photosynthesis, light reaction photosynthetic electron transport in photosystem II electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity DNA-directed RNA polymerase activity NADH dehydrogenase (ubiquinone) activity ATP synthesis coupled proton transport photosynthetic electron transport chain chlorophyll binding photosystem transcription, DNA-dependent cytochrome complex assembly aerobic respiration membrane rRNA binding electron carrier activity hydrogen ion transmembrane transporter activity cytochrome-c oxidase activity ribonucleoside_binding ribosome translation structural constituent of ribosome oxidation-reduction process heme binding heme transport heme transporter activity photosystem I oxidoreductase activity, acting on NADH or NADPH quinone binding electron transport chain thylakoid proton-transporting ATP synthase complex, catalytic core F(1) integral to membrane iron ion binding NAD binding hydrogen ion transporting ATP synthase activity, rotational mechanism aerobic respiration I (cytochrome c) NAD/NADH phosphorylation and dephosphorylation aerobic respiration III (alternative oxidase pathway) photosynthesis light reactions Non-alcoholic_fatty_liver_disease_(NAFLD) Photosynthesis Epstein-Barr_virus_infection Photosynthesis RNA_degradation adenosine ribonucleotides de novo biosynthesis | details |
| CFinderADM000029 | Transcription regulator: ARID E3: HECT Proteoglycans_in_cancer | details |
| CFinderADM000180 | Transcription factor: MYB | details |
| CFinderADM000245 | RNA binding | details |
| CFinderADM000263 | ent-kaurene biosynthesis I Diterpenoid_biosynthesis | details |
| CFinderADM000824 | ribonuclease III activity RNA processing RNA binding Ino80_complex regulation_of_gene_expression methionine biosynthesis II Proteoglycans_in_cancer Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |