CFinderADM000271 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| signal recognition particle | 0.022711177 | GO:0048500 |
| mediator complex | 0.02922795 | GO:0016592 |
| SRP-dependent cotranslational protein targeting to membrane | 0.036552617 | GO:0006614 |
| regulation_of_gene_expression | 0.036552617 | GO:0010468 |
| regulation of transcription from RNA polymerase II promoter | 0.045702151 | GO:0006357 |
| E3: RING | 0.048221014 | gene family |
| Transcription regulator: SNF2 | 0.048221014 | gene family |
| Peroxisome | 0.022711177 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g079990.1 | Eukaryotic aspartyl protease family protein | AT1G03220 (4.00E-51) |
| Solyc02g088870.1 | Putative endonuclease or glycosyl hydrolase | AT3G62200 (4.00E-61) |
| Solyc04g015870.1 | MuDR family transposase | |
| Solyc05g041710.1 | ||
| Solyc05g044570.1 | Helicase protein with RING/U-box domain | AT1G05120 (5.00E-72) |
| Solyc06g010020.1 | ||
| Solyc07g032570.1 | ||
| Solyc07g041360.1 | ||
| Solyc07g049620.1 | ||
| Solyc07g061700.1 | ||
| Solyc08g014460.1 | MuDR family transposase | |
| Solyc08g029010.1 | ||
| Solyc08g062060.1 | chromatin remodeling 31 | |
| Solyc10g033560.1 | SRP72 RNA-binding domain | |
| Solyc10g055010.1 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | AT2G28230 (2.00E-53) |
| Solyc10g055280.1 | Leucine-rich repeat protein kinase family protein | |
| Solyc11g032180.1 | Transducin/WD40 repeat-like superfamily protein | |
| Solyc12g062710.1 | RING/FYVE/PHD zinc finger superfamily protein | AT2G02960 (2.00E-31) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000009 | cytochrome-c oxidase activity ribulose-bisphosphate carboxylase activity proton-transporting two-sector ATPase complex, proton-transporting domain carbon fixation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation Non-alcoholic_fatty_liver_disease_(NAFLD) | details |
| CFinderADM000016 | transmembrane transport membrane integral to membrane pectate lyase activity cation transport solute:hydrogen antiporter activity protein phosphorylation protein kinase activity exocytosis phospholipid binding response to stress vesicle docking enzyme inhibitor activity PPC:5.2.1: Other Kinase Transcription factor: LIM nutrient reservoir activity cell wall transferase activity, transferring glycosyl groups cell wall modification pectinesterase activity Pentose_and_glucuronate_interconversions non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | details |
| CFinderADM000045 | Transcription factor: NAC Isoquinoline_alkaloid_biosynthesis | details |
| CFinderADM000057 | details | |
| CFinderADM000091 | Transcription factor: zf-HD | details |
| CFinderADM000104 | crocetin esters biosynthesis | details |
| CFinderADM000173 | biosynthetic process trans-zeatin biosynthesis methionine salvage cycle II (plants) ethylene biosynthesis I (plants) | details |
| CFinderADM000185 | details | |
| CFinderADM000214 | details | |
| CFinderADM000296 | regulation of transcription from RNA polymerase II promoter Transcription factor: M-TYPE mediator complex RNA_polymerase_II_transcription_cofactor_activity | details |
| CFinderADM000404 | RNA_polymerase_II_transcription_cofactor_activity mediator complex regulation of transcription from RNA polymerase II promoter 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Choline_metabolism_in_cancer | details |
Expression profiles
 Show details about module gene expression profiling |