CFinderADM000410 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mismatched DNA binding | 0.027044167 | GO:0030983 |
| thiamine pyrophosphate binding | 0.027044167 | GO:0030976 |
| phosphotransferase activity, alcohol group as acceptor | 0.042725141 | GO:0016773 |
| glycerol degradation I | 0.004143586 | plantCyc |
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 0.006896243 | plantCyc |
| Mismatch_repair | 0.012415738 | KEGG |
| Ubiquinone_and_other_terpenoid-quinone_biosynthesis | 0.023515058 | KEGG |
| ABC_transporters | 0.023515058 | KEGG |
| Plant-pathogen_interaction | 0.023515058 | KEGG |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.005973132 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g080330.2 | Bax inhibitor-1 family protein | AT4G15470 (2.00E-76) |
| Solyc03g080010.2 | DNA mismatch repair protein MutS, type 2 | AT5G54090 (0) |
| Solyc04g005190.2 | magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases | AT1G68890 (0) |
| Solyc05g008350.2 | ABC-2 type transporter family protein | AT2G01320 (0) |
| Solyc05g047540.2 | Pentatricopeptide repeat (PPR) superfamily protein | AT3G42630 (5.00E-89) |
| Solyc05g047560.1 | UDP-Glycosyltransferase superfamily protein | AT5G59070 (2.00E-137) |
| Solyc07g039190.2 | AT5G56850 (3.00E-26) | |
| Solyc11g042940.1 | xylulose kinase-1 | AT2G21370 (1.00E-94) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000053 | Transcription factor: C2C2-Dof Transcription factor: NAC Starch_and_sucrose_metabolism | details |
| CFinderADM000193 | ATP binding kinesin complex ATP-dependent DNA helicase activity Transcription regulator: PHD chromatin binding Viral_carcinogenesis | details |
| CFinderADM000223 | kinesin complex microtubule-based movement signal transduction microtubule motor activity microtubule binding | details |
| CFinderADM000240 | leucyl-tRNA aminoacylation ATP binding leucine-tRNA ligase activity nucleotide binding tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity aminoacyl-tRNA_editing_activity mismatched DNA binding metalloendopeptidase activity tRNA charging Aminoacyl-tRNA_biosynthesis Mismatch_repair | details |
| CFinderADM000375 | DUB: UCH DNA-3-methyladenine glycosylase activity ubiquitin-specific_protease_activity base-excision repair ubiquitin-dependent protein catabolic process Base_excision_repair | details |
| CFinderADM000378 | aminoacyl-tRNA_editing_activity leucine-tRNA ligase activity leucyl-tRNA aminoacylation sigma factor activity mismatched DNA binding transcription initiation, DNA-dependent phosphatidylglycerol biosynthesis II (non-plastidic) CA1P biosynthesis phosphatidylglycerol biosynthesis I (plastidic) cardiolipin biosynthesis II tRNA charging Glycerophospholipid_metabolism Aminoacyl-tRNA_biosynthesis Mismatch_repair | details |
| CFinderADM000409 | carboxylic acid metabolic process mismatched DNA binding carboxy-lyase activity salidroside biosynthesis hydroxycinnamic acid tyramine amides biosynthesis Mismatch_repair Isoquinoline_alkaloid_biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 hydrolysis and/or rearrangement of glycosidic bonds Glycoside Hydrolases GH89 formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000414 | Two-component_system | details |
| CFinderADM000430 | regulation_of_barrier_septum_assembly cell division Transcription factor: C2C2-GATA small GTPase mediated signal transduction | details |
| CFinderADM000447 | RNA binding eukaryotic translation initiation factor 2 complex seryl-tRNA aminoacylation tRNA charging | details |
| CFinderADM000544 | Transcription factor: C2C2-Dof oxidoreductase_activity,_acting_on_diphenols_and_related_substances_as_donors ubiquinol-cytochrome-c reductase activity DNA binding 2 iron, 2 sulfur cluster binding glucose and glucose-1-phosphate degradation L-ascorbate biosynthesis I (L-galactose pathway) | details |
| CFinderADM000591 | eukaryotic translation initiation factor 2 complex preribosome, small subunit precursor rRNA processing nucleic acid binding protein serine/threonine kinase activity translation initiation factor activity | details |
| CFinderADM000592 | PPC:1.13.3: Leucine Rich Repeat Kinase III protein phosphorylation PPC:5.2.1: Other Kinase protein kinase activity ATP binding Platinum_drug_resistance | details |
| CFinderADM000593 | formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000625 | nucleotide binding tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity cytoplasm arginyl-tRNA aminoacylation seryl-tRNA aminoacylation arginine-tRNA ligase activity serine-tRNA ligase activity ATP binding tRNA charging Aminoacyl-tRNA_biosynthesis | details |
| CFinderADM000634 | protein methylation methyltransferase activity | details |
| CFinderADM000685 | protein methylation | details |
| CFinderADM000716 | leaf_development radial_pattern_formation asymmetric_cell_division protein phosphorylation protein kinase activity ATP binding PPC:1.13.3: Leucine Rich Repeat Kinase III PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription factor: GRAS Platinum_drug_resistance | details |
| CFinderADM000737 | transcription, DNA-dependent Transcription regulator: PHD chromatin binding | details |
| CFinderADM000738 | DNA replication small GTPase mediated signal transduction Transcription factor: bZIP Alzheimer's_disease | details |
| CFinderADM000833 | DUB: UCH ubiquitin-dependent protein catabolic process ubiquitin-specific_protease_activity | details |
| CFinderADM001035 | PPC:1.9.5: Putative LRR receptor-like protein kinase/Receptor protein kinase like protein Transcription regulator: C2C2-CO-like oxidoreductase_activity,_acting_on_diphenols_and_related_substances_as_donors ubiquinol-cytochrome-c reductase activity 2 iron, 2 sulfur cluster binding | details |
| CFinderADM001044 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 | details |
| CFinderADM001045 | protein phosphatase type 2A complex adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 | details |
| CFinderADM001056 | small GTPase mediated signal transduction proton-transporting V-type ATPase, V0 domain Transcription regulator: C2C2-CO-like GTP binding Transcription factor: TCP ATP hydrolysis coupled proton transport adenosine nucleotides degradation I | details |
| CFinderADM001059 | nucleotide binding tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity leucyl-tRNA aminoacylation alanyl-tRNA aminoacylation leucine-tRNA ligase activity aminoacyl-tRNA_editing_activity alanine-tRNA ligase activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA dihydrouridine synthase activity ATP binding tRNA aminoacylation tRNA processing tRNA charging Aminoacyl-tRNA_biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |