CFinderADM000935 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| tRNA aminoacylation | 0.005696119 | GO:0043039 |
| histidine biosynthetic process | 0.005696119 | GO:0000105 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.01294852 | GO:0016876 |
| tRNA aminoacylation for protein translation | 0.013262277 | GO:0006418 |
| aminoacyl-tRNA ligase activity | 0.032287533 | GO:0004812 |
| nucleotide binding | 0.045751835 | GO:0000166 |
| histidine biosynthesis | 0.006731292 | plantCyc |
| tRNA charging | 0.016251851 | plantCyc |
| Aminoacyl-tRNA_biosynthesis | 0.035583926 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g087330.2 | B12D protein | AT3G48140 (1.00E-33) |
| Solyc04g056340.2 | Tyrosine phosphatase family protein | AT3G02800 (2.00E-71) |
| Solyc05g005800.2 | Threonyl-tRNA synthetase | AT5G26830 (0) |
| Solyc07g064810.2 | HIS HF | AT4G26900 (0) |
| Solyc08g079260.2 | HSP70-interacting protein 1 | AT4G22670 (8.00E-80) |
| Solyc08g081700.1 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000141 | base-excision repair multicellular organismal development Transcription factor: B3 Transcription factor: ERF Base_excision_repair | details |
| CFinderADM000564 | nuclear_cap_binding_complex AP-3_adaptor_complex mRNA_transport RNA metabolic process mRNA_cis_splicing,_via_spliceosome RNA_cap_binding membrane coat vesicle-mediated transport intracellular protein transport | details |
| CFinderADM000827 | tetrahydrofolate_biosynthetic_process GTP_cyclohydrolase_I_activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I tetrahydrofolate biosynthesis II very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Folate_biosynthesis Peroxisome | details |
| CFinderADM000896 | Transcription factor: C2C2-LSD homoserine biosynthesis trehalose biosynthesis VI methylerythritol phosphate pathway II D-serine degradation methylerythritol phosphate pathway I lysine biosynthesis VI thiosulfate disproportionation III (rhodanese) trans, trans-farnesyl diphosphate biosynthesis serine racemization mevalonate pathway I formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000909 | AP-3_adaptor_complex nuclear_cap_binding_complex mRNA_cis_splicing,_via_spliceosome RNA metabolic process mRNA_transport RNA_cap_binding membrane coat solute:hydrogen antiporter activity cation transport | details |
| CFinderADM000910 | retromer complex chromatin remodeling retrograde transport, endosome to Golgi Ino80_complex phosphoric diester hydrolase activity protein transporter activity protein transport Fanconi_anemia_pathway | details |
| CFinderADM000936 | ammonium_transport histidine biosynthetic process tRNA aminoacylation ammonium_transmembrane_transport membrane ammonium transmembrane transporter activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation for protein translation histidine biosynthesis pyridine nucleotide cycling (plants) tRNA charging Oxytocin_signaling_pathway Aminoacyl-tRNA_biosynthesis Peroxisome | details |
| CFinderADM001275 | AP-3_adaptor_complex membrane coat DUB: USP intracellular protein transport vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |