CFinderADM001176 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Transcription regulator: HMG | 0.001381275 | gene family |
| multicellular organismal development | 0.021380377 | GO:0007275 |
| ubiquitin-dependent protein catabolic process | 0.021380377 | GO:0006511 |
| RNA_transport | 0.014386209 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g078880.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G05450 (0) |
| Solyc03g043600.1 | Protein with RING/U-box and TRAF-like domains | |
| Solyc03g113140.2 | tRNAse Z1 | AT1G74700 (4.00E-119) |
| Solyc08g078610.2 | Zinc knuckle (CCHC-type) family protein | AT3G62330 (3.00E-97) |
| Solyc09g064590.2 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G04080 (0) |
| Solyc10g006090.2 | ENHANCED DOWNY MILDEW 2 | AT5G55390 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000642 | nucleic acid binding DUB: USP microtubule-based process translational initiation RNA_transport | details |
| CFinderADM000648 | Transcription factor: trihelix Transcription factor: MYB-RELATED transcription, DNA-dependent RNA_transport | details |
| CFinderADM000897 | nuclear_exosome_(RNase_complex) RNA processing nucleobase-containing compound metabolic process Transcription regulator: C3H 3'-5' exonuclease activity | details |
| CFinderADM000915 | ATP-dependent chromatin remodeling nucleus chromatin remodeling Transcription regulator: SNF2 nucleosome binding hydrolase_activity,_acting_on_acid_anhydrides hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Tuberculosis MicroRNAs_in_cancer | details |
| CFinderADM000916 | ATP-dependent chromatin remodeling nucleus chromatin remodeling Transcription regulator: SNF2 nucleosome binding hydrolase_activity,_acting_on_acid_anhydrides nucleic acid binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MicroRNAs_in_cancer Tuberculosis | details |
| CFinderADM001005 | nuclear_cap_binding_complex RNA metabolic process mRNA_cis_splicing,_via_spliceosome mRNA_transport RNA_cap_binding RNA modification protein_peptidyl-prolyl_isomerization 4 iron, 4 sulfur cluster binding Herpes_simplex_infection Cationic_antimicrobial_peptide_(CAMP)_resistance | details |
| CFinderADM001006 | nuclear_cap_binding_complex mRNA_cis_splicing,_via_spliceosome mRNA_transport RNA metabolic process RNA_cap_binding Herpes_simplex_infection | details |
| CFinderADM001158 | nuclear_exosome_(RNase_complex) nucleic acid binding 3'-5' exonuclease activity Transcription factor: C2H2 RNA processing nucleobase-containing compound metabolic process MicroRNAs_in_cancer Endocrine_resistance Herpes_simplex_infection | details |
Expression profiles
 Show details about module gene expression profiling |