TissueCFM000295 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| peptide deformylase activity | 0.006347881 | GO:0042586 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.017971169 | GO:0016765 |
| isoprenoid biosynthetic process | 0.018977496 | GO:0008299 |
| nonaprenyl diphosphate biosynthesis I | 0.003967461 | plantCyc |
| octaprenyl diphosphate biosynthesis | 0.003967461 | plantCyc |
| hexaprenyl diphosphate biosynthesis | 0.003967461 | plantCyc |
| nonaprenyl diphosphate biosynthesis II | 0.004463137 | plantCyc |
| heptaprenyl diphosphate biosynthesis | 0.004759309 | plantCyc |
| geranylgeranyl diphosphate biosynthesis | 0.004759309 | plantCyc |
| superpathway of plastoquinol biosynthesis | 0.004759309 | plantCyc |
| superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | 0.004759309 | plantCyc |
| superpathway of phylloquinol biosynthesis | 0.004759309 | plantCyc |
| superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | 0.004759309 | plantCyc |
| choline biosynthesis III | 0.012967979 | plantCyc |
| phosphatidate metabolism, as a signaling molecule | 0.023741791 | plantCyc |
| phospholipases | 0.035097452 | plantCyc |
| Photosynthesis | 0.041711206 | KEGG |
| Terpenoid backbone biosynthesis | 0.018266258 | KEGG |
| Choline metabolism in cancer | 0.018266258 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g086680.2 | peptide deformylase 1B | AT5G14660 (8.00E-90) |
| Solyc03g043750.2 | NAD(P)H dehydrogenase C1 | AT5G08740 (0) |
| Solyc07g061990.2 | solanesyl diphosphate synthase 1 | AT1G78510 (3.00E-158) |
| Solyc08g066800.2 | phospholipase D alpha 1 | AT3G15730 (0) |
| Solyc09g010110.2 | chaperone protein dnaJ-related | AT5G06130 (2.00E-99) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000640 | oxidation-reduction process Ubiquitin_Proteasome_system, DUB: OTU adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 formaldehyde oxidation II (glutathione-dependent) fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) divinyl ether biosynthesis I 9-lipoxygenase and 9-allene oxide synthase pathway trans-lycopene biosynthesis II (plants) methyl ketone biosynthesis Linoleic acid metabolism Retrograde endocannabinoid signaling PPAR signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |