TissueCFM000340 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| cell wall | 0.000964565 | GO:0005618 |
| enzyme inhibitor activity | 0.001027224 | GO:0004857 |
| pectinesterase activity | 0.001027224 | GO:0030599 |
| cell wall modification | 0.001241873 | GO:0042545 |
| transcription factor activity,transcription factor binding | 0.001752778 | GO:0000989 |
| 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 0.020969863 | GO:0003854 |
| steroid biosynthetic process | 0.035378389 | GO:0006694 |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 0.037594023 | GO:0016616 |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.000629365 | gene family |
| Transcription_related, Transcription factor: GRAS | 0.034646207 | gene family |
| homogalacturonan degradation | 0.001497434 | plantCyc |
| UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) | 0.014447313 | plantCyc |
| UDP-sugars interconversion | 0.016253281 | plantCyc |
| L-ascorbate biosynthesis V | 0.016253281 | plantCyc |
| superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis | 0.016253281 | plantCyc |
| Pentose and glucuronate interconversions | 0.003389758 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g008910.2 | scarecrow-like 3 | AT1G50420 (1.00E-175) |
| Solyc02g063510.1 | AT5G67020 (4.00E-39) | |
| Solyc03g083360.2 | pectin methylesterase PCR fragment F | AT5G53370 (0) |
| Solyc03g117280.2 | AT2G12400 (2.00E-134) | |
| Solyc03g123630.2 | pectin methylesterase 3 | AT3G14310 (0) |
| Solyc06g084290.2 | TRICHOME BIREFRINGENCE-LIKE 11 | AT3G06080 (2.00E-148) |
| Solyc09g092330.1 | UDP-D-glucuronate 4-epimerase 6 | AT3G23820 (0) |
| Solyc12g010130.1 | SOS3-interacting protein 3 | AT4G30960 (2.00E-171) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000002 | DNA integration gene silencing by RNA HTLV-I infection | details |
| TissueCFM000968 | mannose-6-phosphate isomerase activity GDP-mannose_biosynthetic_process steroid biosynthetic process oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen zinc ion binding 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidation-reduction process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Ubiquitin_Proteasome_system, E2: UBC D-mannose degradation mannitol biosynthesis L-ascorbate biosynthesis V 9-lipoxygenase and 9-allene oxide synthase pathway GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) divinyl ether biosynthesis I UDP-sugars interconversion Linoleic acid metabolism Amino sugar and nucleotide sugar metabolism Biofilm formation - Pseudomonas aeruginosa | details |
| TissueCFM001049 | pectinesterase activity serine-type carboxypeptidase activity 3-beta-hydroxy-delta5-steroid dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor enzyme inhibitor activity isomerase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 trehalose degradation II (trehalase) UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) L-ascorbate biosynthesis V UDP-sugars interconversion superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis homogalacturonan degradation Galactose metabolism Amino sugar and nucleotide sugar metabolism Pentose and glucuronate interconversions | details |
| TissueCFM001443 | transcription factor activity,transcription factor binding holo-[acyl-carrier-protein] synthase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Transcription_related, Transcription factor: GRAS acyl carrier protein metabolism I 9-lipoxygenase and 9-allene oxide synthase pathway divinyl ether biosynthesis I Linoleic acid metabolism Pantothenate and CoA biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |