TissueCFM000396 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mRNA_3'-end_processing | 0.009592601 | GO:0031124 |
| small GTPase mediated signal transduction | 0.042041948 | GO:0007264 |
| Taste transduction | 0.026547859 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g079540.2 | secretion-associated RAS super family 2 | AT4G02080 (3.00E-85) |
| Solyc02g078260.2 | DNA-directed RNA polymerase family protein | AT4G21710 (0) |
| Solyc03g119460.2 | hydroxyproline-rich glycoprotein family protein | |
| Solyc04g009950.2 | cell division cycle 5 | AT1G09770 (0) |
| Solyc04g081210.2 | IQ-domain 32 | AT1G19870 (2.00E-102) |
| Solyc08g082850.2 | general control non-repressible 3 | AT1G64550 (0) |
| Solyc11g033270.1 | mitogen-activated protein kinase kinase kinase 7 | AT3G13530 (0) |
| Solyc11g070100.1 | hydroxyproline-rich glycoprotein family protein | AT3G21320 (3.00E-36) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000271 | beta-galactosidase complex urea_catabolic_process nickel cation binding beta-galactosidase activity small GTPase mediated signal transduction urea degradation II superpathway of allantoin degradation in plants Epithelial cell signaling in Helicobacter pylori infection Lysosome hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM000499 | phosphoric ester hydrolase activity ribonucleoside_binding DNA binding helicase activity transcription, DNA-dependent DNA-directed RNA polymerase activity Transcription_related, Transcription regulator: ARID D-myo-inositol (1,4,5)-trisphosphate degradation 3-phosphoinositide biosynthesis Phosphatidylinositol signaling system Herpes simplex infection | details |
| TissueCFM000625 | damaged DNA binding small GTPase mediated signal transduction nucleobase-containing compound metabolic process 3'-5' exonuclease activity phosphotransferase activity, alcohol group as acceptor | details |
| TissueCFM000698 | damaged DNA binding protein domain specific binding 3'-5' exonuclease activity nucleobase-containing compound metabolic process small GTPase mediated signal transduction DNA repair | details |
| TissueCFM000754 | posttranslational_protein_targeting_to_membrane,_translocation mRNA processing ribonuclease activity Protein_kinases_phosphatases, PPC:4.3.2: Unknown Function Kinase 3-phosphoinositide biosynthesis | details |
| TissueCFM000824 | acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors small GTPase mediated signal transduction | details |
| TissueCFM000987 | nucleotide biosynthetic process ribose phosphate diphosphokinase activity tRNA aminoacylation for protein translation small GTPase mediated signal transduction fatty acid biosynthetic process PRPP biosynthesis I asparagine degradation I tRNA charging Cyanoamino acid metabolism Steroid biosynthesis Purine metabolism Aminoacyl-tRNA biosynthesis | details |
| TissueCFM001163 | transcription, DNA-dependent acid phosphatase activity ribonucleoside_binding phosphate acquisition Tuberculosis | details |
| TissueCFM001169 | endonuclease activity serine-type carboxypeptidase activity ATPase activity, coupled to transmembrane movement of substances violdelphin biosynthesis cyanidin 3,7-diglucoside polyacylation biosynthesis | details |
| TissueCFM001335 | small GTPase mediated signal transduction protein domain specific binding Parkinson's disease | details |
Expression profiles
 Show details about module gene expression profiling |