TissueCFM000474 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| response to metal ion | 0.002159019 | GO:0010038 |
| phytochelatin biosynthetic process | 0.002159019 | GO:0046938 |
| glutathione gamma-glutamylcysteinyltransferase activity | 0.005078378 | GO:0016756 |
| mismatched DNA binding | 0.020293052 | GO:0030983 |
| Transcription_related, Transcription regulator: SNF2 | 0.016251851 | gene family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.016251851 | gene family |
| phytochelatins biosynthesis | 0.001971762 | plantCyc |
| allantoin degradation to ureidoglycolate II (ammonia producing) | 0.001971762 | plantCyc |
| allantoin degradation to ureidoglycolate I (urea producing) | 0.001971762 | plantCyc |
| homophytochelatin biosynthesis | 0.001971762 | plantCyc |
| xylogalacturonan biosynthesis | 0.014164026 | plantCyc |
| Mismatch repair | 0.008626756 | KEGG |
| Purine metabolism | 0.026335253 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g078400.2 | allantoinase | AT4G04955 (0) |
| Solyc02g088920.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | AT5G60980 (6.00E-61) |
| Solyc06g050510.2 | chromatin remodeling 42 | AT5G20420 (0) |
| Solyc07g018350.2 | MUTS homolog 7 | AT3G24495 (0) |
| Solyc09g072620.2 | phytochelatin synthase 1 (PCS1) | AT5G44070 (6.00E-173) |
| Solyc12g008340.1 | Exostosin family protein | AT5G19670 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000634 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc formation of glycosidic bonds, GlycosylTransferases: GTnc xylan biosynthesis xylogalacturonan biosynthesis Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM000751 | mismatched DNA binding aspartic-type endopeptidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc xylogalacturonan biosynthesis Mismatch repair | details |
| TissueCFM000807 | kinesin complex tricarboxylic acid cycle carbon fixation phosphoenolpyruvate carboxylase activity amino acid binding Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase allantoin degradation to ureidoglycolate I (urea producing) allantoin degradation to ureidoglycolate II (ammonia producing) CO2 fixation into oxaloacetate (anapleurotic) glutamine biosynthesis III Purine metabolism Two-component system Methane metabolism | details |
| TissueCFM000955 | hydrolase activity kinesin complex Transcription_related, Transcription factor: MIKC Transcription_related, Transcription factor: C2H2 allantoin degradation to ureidoglycolate II (ammonia producing) allantoin degradation to ureidoglycolate I (urea producing) pyridine nucleotide cycling (plants) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II Peroxisome Purine metabolism Oxytocin signaling pathway Chemical carcinogenesis | details |
| TissueCFM001080 | response to metal ion phytochelatin biosynthetic process glutathione gamma-glutamylcysteinyltransferase activity mismatched DNA binding ATP binding Transcription_related, Transcription regulator: SNF2 homophytochelatin biosynthesis phytochelatins biosynthesis Mismatch repair Viral carcinogenesis | details |
| TissueCFM001249 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Transcription_related, Transcription factor: C2H2 allantoin degradation to ureidoglycolate I (urea producing) allantoin degradation to ureidoglycolate II (ammonia producing) Purine metabolism Two-component system beta-Lactam resistance | details |
| TissueCFM001259 | phytochelatin biosynthetic process response to metal ion glutathione gamma-glutamylcysteinyltransferase activity mismatched DNA binding Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII formation of glycosidic bonds, GlycosylTransferases: GTnc homophytochelatin biosynthesis phytochelatins biosynthesis xylogalacturonan biosynthesis Mismatch repair | details |
Expression profiles
 Show details about module gene expression profiling |