TissueCFM000488 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| dimethylallyltranstransferase activity | 3.44181E-05 | GO:0004161 |
| biosynthetic process | 0.000364599 | GO:0009058 |
| carboxylic acid metabolic process | 0.009048058 | GO:0019752 |
| carboxy-lyase activity | 0.013434654 | GO:0016831 |
| pyridoxal phosphate binding | 0.024937582 | GO:0030170 |
| trans-zeatin biosynthesis | 0.001172571 | plantCyc |
| phenylethanol biosynthesis | 0.005175681 | plantCyc |
| Alcoholism | 0.002876041 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g106850.1 | ||
| Solyc06g033900.1 | RNA polymerase Rpb7-like, N-terminal domain | |
| Solyc07g043220.1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | AT1G43710 (5.00E-29) |
| Solyc11g061860.1 | isopentenyltransferase 5 | |
| Solyc11g061910.1 | isopentenyltransferase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000068 | S-adenosylmethionine_biosynthetic_process methionine adenosyltransferase activity methionine salvage cycle III (animals) S-adenosyl-L-methionine cycle II methionine degradation I (to homocysteine) methionine salvage cycle I (bacteria and plants) S-adenosyl-L-methionine biosynthesis methionine salvage cycle II (plants) ethylene biosynthesis I (plants) hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM000150 | mediator complex RNA_polymerase_II_transcription_cofactor_activity sulfotransferase activity dimethylallyltranstransferase activity regulation of transcription from RNA polymerase II promoter hydroxyjasmonate sulfate biosynthesis | details |
| TissueCFM000167 | carboxylic acid metabolic process Transcription_related, Transcription factor: M-TYPE Alcoholism | details |
| TissueCFM000273 | Transcription_related, Transcription factor: MYB-RELATED | details |
| TissueCFM000331 | dimethylallyltranstransferase activity biosynthetic process tRNA processing proton-transporting ATP synthase complex, catalytic core F(1) tRNA (guanine-N2-)-methyltransferase activity ATP metabolic process trans-zeatin biosynthesis adenosine ribonucleotides de novo biosynthesis Epstein-Barr virus infection | details |
| TissueCFM000345 | biosynthetic process NAD+ ADP-ribosyltransferase activity dimethylallyltranstransferase activity trans-zeatin biosynthesis methionine salvage cycle II (plants) ethylene biosynthesis I (plants) Longevity regulating pathway - worm | details |
| TissueCFM000599 | mediator complex | details |
Expression profiles
 Show details about module gene expression profiling |