TissueCFM000618 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| autophagic vacuole assembly | 2.23726E-06 | GO:0000045 |
| cytoplasm | 0.000611399 | GO:0005737 |
| microtubule-based process | 0.006252147 | GO:0007017 |
| microtubule | 0.006897729 | GO:0005874 |
| GTPase activity | 0.023250362 | GO:0003924 |
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 0.002876041 | plantCyc |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.007320823 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g078410.1 | Thioesterase superfamily protein | AT1G48320 (1.00E-55) |
| Solyc02g080590.2 | Ubiquitin-like superfamily protein | AT1G62040 (7.00E-53) |
| Solyc03g097110.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT4G17720 (1.00E-97) |
| Solyc08g006890.2 | Tubulin/FtsZ family protein | AT4G14960 (0) |
| Solyc08g007400.2 | Ubiquitin-like superfamily protein | AT4G16520 (2.00E-58) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000329 | microtubule nickel cation binding nitrogen compound metabolic process microtubule-based process GTPase activity UDP-L-arabinose biosynthesis II (from L-arabinose) very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Biosynthesis of unsaturated fatty acids Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM000521 | microtubule nickel cation binding microtubule-based process nitrogen compound metabolic process GTPase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Ubiquinone and other terpenoid-quinone biosynthesis | details |
| TissueCFM000617 | autophagic vacuole assembly cation binding alpha-amylase activity microtubule-based process microtubule GTPase activity cytoplasm calcium ion binding 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Ubiquinone and other terpenoid-quinone biosynthesis Carbohydrate digestion and absorption hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TissueCFM000619 | Ubiquitin_Proteasome_system, E3 adaptor: F-box 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) Ubiquinone and other terpenoid-quinone biosynthesis Cell cycle - Caulobacter | details |
| TissueCFM000744 | cytoplasm autophagic vacuole assembly peptide-methionine-(S)-S-oxide reductase activity oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor iron-sulfur cluster assembly protein repair iron-sulfur cluster binding | details |
| TissueCFM000927 | autophagic vacuole assembly cytoplasm Ubiquitin_Proteasome_system, E3 adaptor: F-box Transcription_related, Transcription regulator: HB | details |
Expression profiles
 Show details about module gene expression profiling |