TissueCFM001029 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mismatch repair complex | 0.008703031 | GO:0032300 |
| ATP binding | 0.01768262 | GO:0005524 |
| nucleosome binding | 0.01768262 | GO:0031491 |
| regulation_of_cell_cycle | 0.018541505 | GO:0051726 |
| ATP-dependent chromatin remodeling | 0.018541505 | GO:0043044 |
| nucleus | 0.028475791 | GO:0005634 |
| chromatin remodeling | 0.030090945 | GO:0006338 |
| cytoskeleton organization | 0.030090945 | GO:0007010 |
| cell cycle | 0.030831438 | GO:0007049 |
| kinesin complex | 0.037389121 | GO:0005871 |
| regulation of transcription from RNA polymerase II promoter | 0.04221019 | GO:0006357 |
| chromatin binding | 0.047038436 | GO:0003682 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.047038436 | GO:0016818 |
| mismatched DNA binding | 0.047038436 | GO:0030983 |
| Transcription_related, Transcription regulator: RB | 0.007229274 | gene family |
| Mismatch repair | 0.030831438 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g005330.2 | microtubule-associated proteins 70-2 | AT1G68060 (0) |
| Solyc03g006420.2 | origin recognition complex 1 | AT4G14700 (0) |
| Solyc04g015300.2 | alpha/beta-Hydrolases superfamily protein | AT4G17150 (7.00E-163) |
| Solyc06g054560.2 | chromatin-remodeling protein 11 | AT3G06400 (0) |
| Solyc07g063130.2 | Protein kinase superfamily protein | AT1G53050 (0) |
| Solyc08g065800.1 | ||
| Solyc08g081120.2 | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | AT1G63640 (2.00E-95) |
| Solyc09g074980.2 | DNA mismatch repair protein, putative | AT4G02460 (0) |
| Solyc09g082510.2 | Kinase interacting (KIP1-like) family protein | AT3G22790 (0) |
| Solyc09g091280.2 | retinoblastoma-related 1 | AT3G12280 (0) |
| Solyc09g092550.2 | Pentatricopeptide repeat (PPR) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000651 | chromatin binding Transcription_related, Transcription factor: B3 Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000691 | ATP-dependent DNA helicase activity ATP binding DNA binding kinesin complex hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides chromatin binding microtubule-based movement Ubiquitin_Proteasome_system, E3: RING Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 Viral carcinogenesis | details |
| TissueCFM000928 | 3-dehydroquinate dehydratase activity shikimate 3-dehydrogenase (NADP+) activity cytoskeleton organization Transcription_related, Transcription regulator: SNF2 chorismate biosynthesis from 3-dehydroquinate Phenylalanine, tyrosine and tryptophan biosynthesis Viral carcinogenesis | details |
| TissueCFM001017 | nucleus cell cycle regulation_of_cell_cycle protein ADP-ribosylation regulation of transcription from RNA polymerase II promoter endoribonuclease activity, producing 5'-phosphomonoesters NAD+ ADP-ribosyltransferase activity ribonuclease III activity Transcription_related, Transcription regulator: RB Longevity regulating pathway - worm Proteoglycans in cancer | details |
| TissueCFM001219 | ATP-dependent chromatin remodeling chromatin remodeling nucleosome binding microtubule-based movement ATP binding hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides chromatin binding kinesin complex Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 Tuberculosis | details |
| TissueCFM001254 | ATP-dependent chromatin remodeling chromosome organization chromatin remodeling ATP binding nucleosome binding chromosome hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides microtubule-based movement kinesin complex DNA binding microtubule motor activity microtubule binding Transcription_related, Transcription regulator: ARID Transcription_related, Transcription regulator: SNF2 Tuberculosis | details |
Expression profiles
 Show details about module gene expression profiling |