TissueCFM001435 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| mitochondrial outer membrane translocase complex | 0.00259045 | GO:0005742 |
| GTP binding | 0.004646788 | GO:0005525 |
| proteasomal ubiquitin-dependent protein catabolic process | 0.00492905 | GO:0043161 |
| protein import into mitochondrial outer membrane | 0.00492905 | GO:0045040 |
| damaged DNA binding | 0.008630483 | GO:0003684 |
| nucleotide-excision repair | 0.009851007 | GO:0006289 |
| multicellular organismal development | 0.028479648 | GO:0007275 |
| ubiquitin-dependent protein catabolic process | 0.032545685 | GO:0006511 |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g063130.2 | Rad23 UV excision repair protein family | AT5G38470 (4.00E-140) |
| Solyc02g094140.2 | translocase of outer membrane 20 kDa subunit 3 | AT3G27080 (3.00E-59) |
| Solyc03g019900.2 | flower-specific, phytochrome-associated protein phosphatase 3 | AT3G19980 (6.00E-179) |
| Solyc05g051570.2 | RAB GTPase homolog H1E | AT5G10260 (1.00E-109) |
| Solyc06g051980.2 | Protein with RING/U-box and TRAF-like domains | AT3G61790 (5.00E-158) |
| Solyc12g099470.1 | eukaryotic translation initiation factor 2 gamma subunit | AT1G04170 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000025 | proteasomal ubiquitin-dependent protein catabolic process nucleotide-excision repair damaged DNA binding cation transport solute:hydrogen antiporter activity UTP and CTP dephosphorylation II pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion UTP and CTP dephosphorylation I Epstein-Barr virus infection | details |
| TissueCFM000662 | lipid binding actin cytoskeleton proteasomal ubiquitin-dependent protein catabolic process nucleotide-excision repair actin_filament_depolymerization isomerase activity damaged DNA binding actin binding | details |
| TissueCFM001057 | protein import into mitochondrial outer membrane mitochondrial outer membrane translocase complex Hippo signaling pathway -fly | details |
| TissueCFM001384 | GTP binding Non-alcoholic fatty liver disease (NAFLD) | details |
| TissueCFM001416 | proteasomal ubiquitin-dependent protein catabolic process nucleotide-excision repair damaged DNA binding metal ion transmembrane transporter activity metal ion transport | details |
| TissueCFM001432 | proteasome core complex proteasome core complex, alpha-subunit complex hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds endopeptidase activity nitrogen compound metabolic process proteolysis involved in cellular protein catabolic process threonine-type endopeptidase activity ubiquitin-dependent protein catabolic process S-methyl-5-thio-α-D-ribose 1-phosphate degradation Proteasome Alanine, aspartate and glutamate metabolism | details |
| TissueCFM001439 | proteasomal ubiquitin-dependent protein catabolic process nucleotide-excision repair damaged DNA binding Proteasome | details |
| TissueCFM001455 | protein import into mitochondrial outer membrane mitochondrial outer membrane translocase complex proteasome core complex proteolysis involved in cellular protein catabolic process threonine-type endopeptidase activity Proteasome pyrimidine deoxyribonucleotides de novo biosynthesis I UTP and CTP dephosphorylation II pyrimidine ribonucleotides interconversion UTP and CTP dephosphorylation I | details |
| TissueCFM001464 | tRNA aminoacylation for protein translation ATP binding tRNA charging Aminoacyl-tRNA biosynthesis ABC transporters | details |
Expression profiles
 Show details about module gene expression profiling |