TreatCFM000250 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| chorismate mutase activity | 0.003799436 | GO:0004106 |
| aromatic amino acid family biosynthetic process | 0.012655856 | GO:0009073 |
| phenylalanine biosynthesis II | 0.002761834 | plantCyc |
| tyrosine biosynthesis II | 0.002761834 | plantCyc |
| Novobiocin biosynthesis | 0.004141082 | KEGG |
| Carbohydrate digestion and absorption | 0.004141082 | KEGG |
| hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | 0.001841223 | gene famuly |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g090900.2 | AT3G60590 (6.00E-86) | |
| Solyc02g082570.1 | ||
| Solyc02g087030.1 | NHL domain-containing protein | |
| Solyc03g043640.2 | Heavy metal transport/detoxification superfamily protein | AT5G17450 (3.00E-39) |
| Solyc04g009630.2 | Glycosyl hydrolases family 31 protein | AT5G11720 (0) |
| Solyc06g009340.2 | Chaperone DnaJ-domain superfamily protein | |
| Solyc08g076740.2 | ||
| Solyc11g017240.1 | chorismate mutase 2 | AT5G10870 (2.00E-71) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000603 | glycerol-3-phosphate dehydrogenase complex glycerol-3-phosphate metabolic process glycerol-3-phosphate catabolic process glycerol-3-phosphate dehydrogenase [NAD+] activity isoprenoid biosynthetic process superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of phylloquinol biosynthesis glycerol-3-phosphate shuttle jasmonic acid biosynthesis Terpenoid backbone biosynthesis Non-small cell lung cancer MAPK signaling pathway - yeast Longevity regulating pathway - worm | details |
| TreatCFM000897 | four-way junction helicase activity DNA recombination glycerol-3-phosphate dehydrogenase complex F-actin capping protein complex barbed-end_actin_filament_capping glycerol-3-phosphate metabolic process glycerol-3-phosphate catabolic process DNA repair poly(ADP-ribose) glycohydrolase activity glycerol-3-phosphate dehydrogenase [NAD+] activity carbohydrate metabolic process glycerol-3-phosphate shuttle Synaptic vesicle cycle MAPK signaling pathway - yeast | details |
| TreatCFM000936 | protein tyrosine/serine/threonine phosphatase activity isomerase activity protein dephosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 starch degradation II Cationic antimicrobial peptide (CAMP) resistance | details |
| TreatCFM000941 | transferase activity, transferring pentosyl groups nicotinate-nucleotide diphosphorylase (carboxylating) activity NAD biosynthetic process Ubiquitin_Proteasome_system, DUB: OTU nicotine biosynthesis superpathway of nicotine biosynthesis NAD biosynthesis I (from aspartate) Nicotinate and nicotinamide metabolism | details |
| TreatCFM001018 | DNA-directed DNA polymerase activity transcription, DNA-dependent phosphatidylinositol metabolic process phosphatidylinositol_phosphate_phosphatase_activity phosphatidylinositol phosphate kinase activity phosphoric ester hydrolase activity nucleotidyltransferase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis | details |
| TreatCFM001255 | carbohydrate metabolic process Starch and sucrose metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001273 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase | details |
| TreatCFM001363 | Wnt signaling pathway Endocrine resistance | details |
| TreatCFM001510 | protein dephosphorylation EGFR tyrosine kinase inhibitor resistance | details |
Expression profiles
 Show details about module gene expression profiling |