TreatCFM000471 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| RNA methylation | 0.005698579 | GO:0001510 |
| RNA methyltransferase activity | 0.016703805 | GO:0008173 |
| nucleic acid binding | 0.016703805 | GO:0003676 |
| ionotropic glutamate receptor activity | 0.016703805 | GO:0004970 |
| nucleobase-containing compound metabolic process | 0.018476445 | GO:0006139 |
| 3'-5' exonuclease activity | 0.019562095 | GO:0008408 |
| protein folding | 0.033005727 | GO:0006457 |
| O-methyltransferase activity | 0.036221123 | GO:0008171 |
| Transcription_related, Transcription regulator: C3H | 0.010834567 | gene family |
| Taste transduction | 0.010867366 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g021760.2 | cleavage and polyadenylation specificity factor 30 | AT1G30460 (4.00E-157) |
| Solyc02g070030.2 | double-stranded RNA binding protein-related / DsRBD protein-related | AT4G20920 (6.00E-133) |
| Solyc03g082390.2 | CTC-interacting domain 11 | AT1G32790 (6.00E-114) |
| Solyc03g082850.2 | 3\'-5\' exonuclease domain-containing protein | AT5G24340 (1.00E-160) |
| Solyc07g052390.2 | glutamate receptor 5 | AT2G32400 (0) |
| Solyc08g082850.2 | general control non-repressible 3 | AT1G64550 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000359 | GTP binding RNA methylation RNA methyltransferase activity O-methyltransferase activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Transcription_related, Transcription factor: SBP Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM000376 | urea_catabolic_process mannose metabolic process alpha-mannosidase activity nickel cation binding mannosidase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors 3'-5' exonuclease activity nucleobase-containing compound metabolic process urea degradation II superpathway of allantoin degradation in plants Epithelial cell signaling in Helicobacter pylori infection Lysosome hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000717 | acyl-CoA metabolic process acyl-CoA_hydrolase_activity charged-tRNA amino acid modification tRNA A64-2'-O-ribosylphosphate transferase activity oligosaccharyltransferase complex protein N-linked glycosylation acyl-CoA hydrolysis ω-hydroxylation of caprate and laurate Protein processing in endoplasmic reticulum Bile secretion | details |
| TreatCFM000836 | exocyst Ubiquitin_Proteasome_system, E3 adaptor: DWD Transcription_related, Transcription regulator: AUX/IAA Parkinson's disease Taste transduction | details |
| TreatCFM001272 | SUMO_transferase_activity protein phosphorylation Transcription_related, Transcription regulator: C3H Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase Alzheimer's disease Platinum drug resistance | details |
| TreatCFM001361 | protein complex assembly alanyl-tRNA aminoacylation tRNA aminoacylation alanine-tRNA ligase activity mitochondrion ligase activity, forming aminoacyl-tRNA and related compounds nucleic acid binding nucleobase-containing compound metabolic process 3'-5' exonuclease activity nucleotide binding tRNA charging Aminoacyl-tRNA biosynthesis Viral carcinogenesis | details |
| TreatCFM001506 | FMN binding Protein_kinases_phosphatases, PPC:5.2.1: Other Kinase Proteasome Porphyrin and chlorophyll metabolism Cell cycle - yeast Taste transduction | details |
Expression profiles
 Show details about module gene expression profiling |