TreatCFM000560 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| 1-deoxy-D-xylulose-5-phosphate synthase activity | 0.010449651 | GO:0008661 |
| terpenoid biosynthetic process | 0.011500786 | GO:0016114 |
| Cytochrome_P450, Cytochrome P450: CYP88B | 0.001295486 | gene family |
| methylerythritol phosphate pathway II | 0.007832276 | plantCyc |
| spermidine biosynthesis I | 0.007832276 | plantCyc |
| methylerythritol phosphate pathway I | 0.007832276 | plantCyc |
| superpathway of polyamine biosynthesis II | 0.007832276 | plantCyc |
| spermine biosynthesis | 0.007832276 | plantCyc |
| GA12 biosynthesis | 0.008265498 | plantCyc |
| volatile benzenoid biosynthesis I (ester formation) | 0.020836813 | plantCyc |
| Diterpenoid biosynthesis | 0.019540394 | KEGG |
| Glutathione metabolism | 0.019540394 | KEGG |
| Terpenoid backbone biosynthesis | 0.019540394 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g007240.2 | spermidine synthase 3 | AT5G53120 (1.00E-156) |
| Solyc04g008370.1 | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding | AT1G11330 (2.00E-120) |
| Solyc11g010850.1 | Deoxyxylulose-5-phosphate synthase | AT4G15560 (0) |
| Solyc12g006460.1 | ent-kaurenoic acid hydroxylase 2 | AT2G32440 (4.00E-101) |
| Solyc12g096770.1 | HXXXD-type acyl-transferase family protein | AT3G26040 (2.00E-50) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000233 | Cytochrome_P450, Cytochrome P450: CYP88B hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 GA12 biosynthesis cytokinin-O-glucosides biosynthesis Zeatin biosynthesis Diterpenoid biosynthesis | details |
| TreatCFM000561 | pentose-phosphate shunt, non-oxidative branch ribose-5-phosphate isomerase activity hydrolase activity, acting on glycosyl bonds spermine biosynthesis superpathway of polyamine biosynthesis II spermidine biosynthesis I volatile benzenoid biosynthesis I (ester formation) Calvin-Benson-Bassham cycle cytokinin-O-glucosides biosynthesis Pentose phosphate pathway Glutathione metabolism Zeatin biosynthesis Carbon fixation in photosynthetic organisms hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000646 | pentose-phosphate shunt, non-oxidative branch ribose-5-phosphate isomerase activity hydrolase activity, acting on glycosyl bonds Transcription_related, Transcription factor: bHLH spermidine biosynthesis I spermine biosynthesis superpathway of polyamine biosynthesis II Calvin-Benson-Bassham cycle Pentose phosphate pathway Glutathione metabolism Carbon fixation in photosynthetic organisms hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |