TreatCFM000621 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| phosphoglycerate kinase activity | 0.003166561 | GO:0004618 |
| glycolysis | 0.018955652 | GO:0006096 |
| Transcription_related, Transcription factor: OFP | 0.006467366 | gene family |
| adhesion to carbohydrates, Glycoside Hydrolases:CBM18;hydrolysis and/or rearrangement of glycosidic bonds, Carbohydrate-Binding Modules:GH19 | 0.006467366 | gene family |
| vitamin E biosynthesis (tocotrienols) | 0.020884865 | plantCyc |
| vitamin E biosynthesis (tocotrienols) | 0.020884865 | plantCyc |
| glycolysis IV (plant cytosol) | 0.027135696 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.027135696 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.027135696 | plantCyc |
| Calvin-Benson-Bassham cycle | 0.027135696 | plantCyc |
| gluconeogenesis I | 0.027135696 | plantCyc |
| Carbon fixation in photosynthetic organisms | 0.024537809 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc04g015190.2 | O-Glycosyl hydrolases family 17 protein | AT4G17180 (0) |
| Solyc04g081230.2 | TLD-domain containing nucleolar protein | AT5G39590 (3.00E-171) |
| Solyc07g066600.2 | phosphoglycerate kinase | AT1G79550 (0) |
| Solyc08g077240.2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT4G18030 (0) |
| Solyc10g082050.1 | Ovate family protein | AT3G52525 (8.00E-29) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000497 | protein ubiquitination Transcription_related, Transcription factor: OFP Proteasome | details |
| TreatCFM000620 | methyltransferase activity Transcription_related, Transcription factor: C2H2 vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) | details |
| TreatCFM001009 | phosphoglycerate kinase activity ubiquitin-specific_protease_activity DNA-directed RNA polymerase activity glycolysis ubiquitin-dependent protein catabolic process transcription, DNA-dependent intracellular Ubiquitin_Proteasome_system, DUB: UCH Transcription_related, Transcription factor: OFP gluconeogenesis I glycolysis IV (plant cytosol) Calvin-Benson-Bassham cycle sucrose biosynthesis I (from photosynthesis) glycolysis I (from glucose 6-phosphate) Carbon fixation in photosynthetic organisms Epstein-Barr virus infection | details |
| TreatCFM001042 | nucleotidyltransferase activity Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: OFP RNA degradation | details |
| TreatCFM001096 | transferase activity, transferring acyl groups adhesion to carbohydrates, Glycoside Hydrolases:CBM18;hydrolysis and/or rearrangement of glycosidic bonds, Carbohydrate-Binding Modules:GH19 CDP-diacylglycerol biosynthesis I triacylglycerol biosynthesis Glycerophospholipid metabolism Ubiquinone and other terpenoid-quinone biosynthesis | details |
| TreatCFM001352 | Transcription_related, Transcription factor: OFP Transcription_related, Transcription regulator: SWI/SNF-BAF60b Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM001439 | Ubiquitin_Proteasome_system, DUB: ULP vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) Tuberculosis Wnt signaling pathway | details |
| TreatCFM001453 | lipoate biosynthetic process large ribosomal subunit lipoate synthase activity 4 iron, 4 sulfur cluster binding iron-sulfur cluster binding Transcription_related, Transcription factor: OFP lipoate biosynthesis and incorporation I lipoate biosynthesis and incorporation II Lipoic acid metabolism | details |
| TreatCFM001454 | proteolysis serine-type peptidase activity Transcription_related, Transcription factor: OFP adhesion to carbohydrates, Glycoside Hydrolases:CBM18;hydrolysis and/or rearrangement of glycosidic bonds, Carbohydrate-Binding Modules:GH19 | details |
| TreatCFM001572 | nuclear_cap_binding_complex mRNA_cis_splicing,_via_spliceosome RNA_cap_binding protein glycosylation galactosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: OFP Terpenoid backbone biosynthesis Glycosaminoglycan biosynthesis - heparan sulfate / heparin | details |
| TreatCFM001586 | DNA catabolic process nucleic acid binding endonuclease activity N-acetyltransferase_activity peptidyl-prolyl cis-trans isomerase activity protein folding Transcription_related, Transcription regulator: GNAT Transcription_related, Transcription factor: OFP NAD/NADH phosphorylation and dephosphorylation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) Cationic antimicrobial peptide (CAMP) resistance Non-alcoholic fatty liver disease (NAFLD) | details |
| TreatCFM001608 | methyltransferase activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) triacylglycerol degradation Vitamin digestion and absorption | details |
Expression profiles
 Show details about module gene expression profiling |