TreatCFM000635 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| tryptophan biosynthetic process | 0.000287902 | GO:0000162 |
| tryptophan synthase activity | 0.002375058 | GO:0004834 |
| pyridoxal phosphate binding | 0.037406373 | GO:0030170 |
| D-myo-inositol-5-phosphate metabolism | 0.019669138 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.019669138 | plantCyc |
| phosphatidate metabolism, as a signaling molecule | 0.019669138 | plantCyc |
| tryptophan biosynthesis | 0.019669138 | plantCyc |
| phospholipases | 0.02519994 | plantCyc |
| Inositol phosphate metabolism | 0.016782702 | KEGG |
| Phenylalanine, tyrosine and tryptophan biosynthesis | 0.021528113 | KEGG |
| Lysosome | 0.021528113 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g105270.2 | tobamovirus multiplication 1 | AT4G21790 (4.00E-94) |
| Solyc03g093440.2 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | AT5G61540 (1.00E-142) |
| Solyc10g055240.1 | PLC-like phosphodiesterases superfamily protein | AT4G38690 (5.00E-140) |
| Solyc11g066740.1 | reticulata-related 1 | AT5G22790 (4.00E-136) |
| Solyc12g096190.1 | tryptophan synthase beta type 2 | AT5G38530 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000200 | CCR4-NOT complex nuclease activity response to hormone stimulus mRNA_catabolic_process Transcription_related, Transcription regulator: ARF Transcription_related, Transcription regulator: Rcd1-like | details |
| TreatCFM000346 | D-myo-inositol-5-phosphate metabolism phosphatidate metabolism, as a signaling molecule D-myo-inositol (1,4,5)-trisphosphate biosynthesis phospholipases Inositol phosphate metabolism | details |
| TreatCFM000365 | Transcription_related, Transcription factor: B3 | details |
| TreatCFM001156 | phosphate-containing compound metabolic process inorganic diphosphatase activity cytoplasm Ubiquitin_Proteasome_system, E2: UBC Oxidative phosphorylation | details |
| TreatCFM001215 | tubulin complex assembly phosphate-containing compound metabolic process tubulin_binding inorganic diphosphatase activity unfolded protein binding cytoplasm magnesium ion binding Ubiquitin_Proteasome_system, E2: UBC D-myo-inositol-5-phosphate metabolism phosphatidate metabolism, as a signaling molecule D-myo-inositol (1,4,5)-trisphosphate biosynthesis phospholipases Base excision repair Oxidative phosphorylation Inositol phosphate metabolism | details |
Expression profiles
 Show details about module gene expression profiling |