TreatCFM000670 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| tocopherol_cyclase_activity | 0.001583463 | GO:0009976 |
| indole-3-acetate activation I | 0.004794505 | plantCyc |
| vitamin E biosynthesis (tocotrienols) | 0.004794505 | plantCyc |
| hydroxyjasmonate sulfate biosynthesis | 0.004794505 | plantCyc |
| vitamin E biosynthesis (tocotrienols) | 0.004794505 | plantCyc |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.007320823 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc04g076740.2 | translocon at the inner envelope membrane of chloroplasts 20 | AT1G04940 (1.00E-102) |
| Solyc05g052650.2 | HXXXD-type acyl-transferase family protein | AT2G39980 (6.00E-30) |
| Solyc06g064560.2 | AT1G12790 (3.00E-75) | |
| Solyc08g068570.2 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | AT4G32770 (0) |
| Solyc12g008690.1 | peptidase M20/M25/M40 family protein | AT1G51760 (4.00E-176) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000242 | details | |
| TreatCFM000642 | sirohydrochlorin cobaltochelatase activity imidazoleglycerol-phosphate dehydratase activity cobalamin biosynthetic process histidine biosynthetic process Ubiquitin_Proteasome_system, E2: UBC siroheme biosynthesis indole-3-acetate activation I hydroxyjasmonate sulfate biosynthesis histidine biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Histidine metabolism Ascorbate and aldarate metabolism Metabolism of xenobiotics by cytochrome P450 | details |
| TreatCFM000842 | metal ion transport metal ion transmembrane transporter activity | details |
| TreatCFM000914 | tocopherol_cyclase_activity Cytochrome_P450, Cytochrome P450: CYP89A indole-3-acetate activation I vitamin E biosynthesis (tocotrienols) L-ascorbate degradation V hydroxyjasmonate sulfate biosynthesis vitamin E biosynthesis (tocotrienols) ascorbate glutathione cycle Ubiquinone and other terpenoid-quinone biosynthesis Glutathione metabolism Toluene degradation | details |
| TreatCFM000946 | sirohydrochlorin cobaltochelatase activity cobalamin biosynthetic process Ubiquitin_Proteasome_system, E2: UBC indole-3-acetate activation I siroheme biosynthesis hydroxyjasmonate sulfate biosynthesis | details |
| TreatCFM001064 | cation transmembrane transporter activity indole-3-acetate activation I hydroxyjasmonate sulfate biosynthesis triacylglycerol degradation Vitamin digestion and absorption | details |
| TreatCFM001539 | NuA4_histone_acetyltransferase_complex Piccolo_NuA4_histone_acetyltransferase_complex hydrolase activity phosphoric diester hydrolase activity regulation of transcription from RNA polymerase II promoter hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I glycerophosphodiester degradation pyridine nucleotide cycling (plants) Glycerophospholipid metabolism | details |
Expression profiles
 Show details about module gene expression profiling |