TreatCFM001010 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| intracellular transport | 0.006331117 | GO:0046907 |
| ATP-dependent_5'-3'_DNA_helicase_activity | 0.016709097 | GO:0043141 |
| ubiquitin-specific_protease_activity | 0.016709097 | GO:0004843 |
| Ubiquitin_Proteasome_system, DUB: UCH | 0.002762948 | gene family |
| Epstein-Barr virus infection | 8.18E-05 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc03g032070.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G67630 (0) |
| Solyc05g010300.2 | DNA-directed RNA polymerase family protein | AT2G15430 (1.00E-156) |
| Solyc06g005340.2 | RAB GTPase homolog 8A | |
| Solyc06g060150.2 | replication factor C subunit 3 | AT1G77470 (5.00E-157) |
| Solyc06g060850.2 | ubiquitin C-terminal hydrolase 3 | AT4G17510 (1.00E-96) |
| Solyc08g062660.2 | RAN binding protein 1 | AT5G58590 (2.00E-71) |
| Solyc08g082100.2 | Transducin/WD40 repeat-like superfamily protein | AT1G64350 (2.00E-123) |
| Solyc09g009030.2 | histone deacetylase 3 | AT3G44750 (1.00E-28) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001009 | phosphoglycerate kinase activity ubiquitin-specific_protease_activity DNA-directed RNA polymerase activity glycolysis ubiquitin-dependent protein catabolic process transcription, DNA-dependent intracellular Ubiquitin_Proteasome_system, DUB: UCH Transcription_related, Transcription factor: OFP gluconeogenesis I glycolysis IV (plant cytosol) Calvin-Benson-Bassham cycle sucrose biosynthesis I (from photosynthesis) glycolysis I (from glucose 6-phosphate) Carbon fixation in photosynthetic organisms Epstein-Barr virus infection | details |
| TreatCFM001072 | chromosome segregation mitotic_cell_cycle regulation of cytokinesis transcription coactivator activity cell cycle microtubule cytoskeleton organization Transcription_related, Transcription regulator: Coactivator p15 Epstein-Barr virus infection | details |
| TreatCFM001204 | histone_binding Transcription_related, Transcription factor: Alfin-like | details |
Expression profiles
 Show details about module gene expression profiling |