TreatCFM001012 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| Golgi membrane | 0.005221818 | GO:0000139 |
| cis-Golgi network | 0.005221818 | GO:0005801 |
| ER to Golgi vesicle-mediated transport | 0.024444236 | GO:0006888 |
| Transcription_related, Transcription factor: ERF | 0.024282362 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g091020.2 | golgi snare 12 | AT2G45200 (5.00E-114) |
| Solyc04g005380.2 | ABI five binding protein | AT1G69260 (4.00E-50) |
| Solyc04g072060.2 | RAB GTPase homolog G3A | AT4G09720 (4.00E-102) |
| Solyc04g076340.2 | ||
| Solyc05g050830.1 | Integrase-type DNA-binding superfamily protein | AT2G44940 (2.00E-35) |
| Solyc06g076400.2 | highly ABA-induced PP2C gene 3 | AT2G29380 (2.00E-112) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000228 | cis-Golgi network Golgi membrane ER to Golgi vesicle-mediated transport transmembrane_transporter_activity integral to membrane signal transduction | details |
| TreatCFM000229 | mannose-6-phosphate isomerase activity carbohydrate metabolic process GDP-mannose_biosynthetic_process cis-Golgi network Golgi membrane ER to Golgi vesicle-mediated transport cellular glucan metabolic process apoplast xyloglucan:xyloglucosyl transferase activity D-mannose degradation mannitol biosynthesis GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Plant hormone signal transduction Biofilm formation - Pseudomonas aeruginosa hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000675 | Transcription_related, Transcription factor: GRF Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Transcription_related, Transcription regulator: HB UDP-L-arabinose biosynthesis II (from L-arabinose) | details |
| TreatCFM000778 | apoplast cell wall Plant hormone signal transduction Asthma hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001117 | Cytochrome_P450, Cytochrome P450: CYP86A Transcription_related, Transcription factor: C2C2-LSD formation of glycosidic bonds, GlycosylTransferases: GTnc suberin monomers biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) simplecoumarins biosynthesis umbelliferone biosynthesis Phenylpropanoid biosynthesis Phenylpropanoid biosynthesis Flavonoid biosynthesis | details |
| TreatCFM001513 | protein domain specific binding glycopeptide_alpha-N-acetylgalactosaminidase_activity cis-Golgi network Golgi membrane ER to Golgi vesicle-mediated transport integral to membrane Starch and sucrose metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
Expression profiles
 Show details about module gene expression profiling |