TreatCFM001205 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| queuine tRNA-ribosyltransferase activity | 0.003598572 | GO:0008479 |
| phosphatase activity | 0.004796715 | GO:0016791 |
| queuosine biosynthetic process | 0.004930044 | GO:0008616 |
| tRNA modification | 0.005750393 | GO:0006400 |
| vacuolar transport | 0.008757963 | GO:0007034 |
| translational initiation | 0.012715427 | GO:0006413 |
| translation initiation factor activity | 0.017153619 | GO:0003743 |
| 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | 0.005028725 | plantCyc |
| Valine, leucine and isoleucine degradation | 0.01164327 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g028900.2 | Transketolase family protein | AT3G13450 (3.00E-169) |
| Solyc01g105970.2 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | AT2G14110 (6.00E-82) |
| Solyc08g065900.2 | SNF7 family protein | AT4G29160 (4.00E-70) |
| Solyc10g006470.2 | Translation initiation factor SUI1 family protein | AT1G54290 (5.00E-56) |
| Solyc12g017690.1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000604 | queuosine biosynthetic process tRNA modification queuine tRNA-ribosyltransferase activity 5'-nucleotidase_activity cytoplasm guanosine nucleotides degradation I pyrimidine salvage pathway guanosine nucleotides degradation II 2-oxoisovalerate decarboxylation to isobutanoyl-CoA adenosine nucleotides degradation I UTP and CTP dephosphorylation I Nicotinate and nicotinamide metabolism Valine, leucine and isoleucine degradation | details |
| TreatCFM001340 | 5'-nucleotidase_activity queuine tRNA-ribosyltransferase activity queuosine biosynthetic process tRNA modification cytoplasm guanosine nucleotides degradation I pyrimidine salvage pathway guanosine nucleotides degradation II 2-oxoisovalerate decarboxylation to isobutanoyl-CoA adenosine nucleotides degradation I UTP and CTP dephosphorylation I Nicotinate and nicotinamide metabolism Valine, leucine and isoleucine degradation | details |
| TreatCFM001431 | translational initiation translation initiation factor activity Transcription_related, Transcription factor: C2H2 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Valine, leucine and isoleucine degradation EGFR tyrosine kinase inhibitor resistance | details |
| TreatCFM001460 | queuosine biosynthetic process tRNA modification queuine tRNA-ribosyltransferase activity glycopeptide_alpha-N-acetylgalactosaminidase_activity Mineral absorption hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001574 | Transcription_related, Transcription factor: NAC 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Valine, leucine and isoleucine degradation Arginine and proline metabolism EGFR tyrosine kinase inhibitor resistance | details |
| TreatCFM001638 | vacuolar transport translational initiation translation initiation factor activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Valine, leucine and isoleucine degradation | details |
Expression profiles
 Show details about module gene expression profiling |