TreatCFM001287 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| sirohydrochlorin cobaltochelatase activity | 0.001583463 | GO:0016852 |
| cobalamin biosynthetic process | 0.002375058 | GO:0009236 |
| protein tyrosine/serine/threonine phosphatase activity | 0.008304089 | GO:0008138 |
| phosphotransferase activity, alcohol group as acceptor | 0.010007829 | GO:0016773 |
| protein dephosphorylation | 0.047182179 | GO:0006470 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 | 0.007335171 | gene family |
| Ubiquitin_Proteasome_system, E2: UBC | 0.012912405 | gene family |
| siroheme biosynthesis | 0.001727215 | plantCyc |
| starch degradation II | 0.00280527 | plantCyc |
| Pentose and glucuronate interconversions | 0.023388775 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g005840.2 | Ubiquitin-conjugating enzyme family protein | AT3G13550 (3.00E-62) |
| Solyc02g086560.2 | sirohydrochlorin ferrochelatase B | AT1G50170 (9.00E-66) |
| Solyc05g053360.2 | ||
| Solyc07g006780.2 | FGGY family of carbohydrate kinase | AT4G30310 (0) |
| Solyc11g007830.1 | dual specificity protein phosphatase (DsPTP1) family protein | AT3G52180 (4.00E-135) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000485 | aromatic compound catabolic process oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_NAD(P)H_as_one_donor,_and_incorporation_of_two_atoms_of_oxygen_into_one_donor protein tyrosine/serine/threonine phosphatase activity 2 iron, 2 sulfur cluster binding oxidoreductase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 D-serine degradation glycine betaine biosynthesis III (plants) serine racemization starch degradation II Glycine, serine and threonine metabolism Valine, leucine and isoleucine biosynthesis Retinol metabolism Vancomycin resistance | details |
| TreatCFM000642 | sirohydrochlorin cobaltochelatase activity imidazoleglycerol-phosphate dehydratase activity cobalamin biosynthetic process histidine biosynthetic process Ubiquitin_Proteasome_system, E2: UBC siroheme biosynthesis indole-3-acetate activation I hydroxyjasmonate sulfate biosynthesis histidine biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Histidine metabolism Ascorbate and aldarate metabolism Metabolism of xenobiotics by cytochrome P450 | details |
| TreatCFM000716 | glutamine metabolic process protein tyrosine/serine/threonine phosphatase activity protein dephosphorylation Cytochrome_P450, Cytochrome P450: CYP704A adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 tryptophan biosynthesis starch degradation II Diterpenoid biosynthesis Biofilm formation - Pseudomonas aeruginosa | details |
| TreatCFM000719 | tetrahydrofolylpolyglutamate synthase activity folic acid-containing compound biosynthetic process phosphotransferase activity, alcohol group as acceptor biosynthetic process phosphatidylglycerol biosynthesis I (plastidic) cardiolipin biosynthesis II phosphatidylglycerol biosynthesis II (non-plastidic) folate polyglutamylation tetrahydrofolate biosynthesis II Glutathione metabolism Glycerophospholipid metabolism Pentose and glucuronate interconversions Antifolate resistance | details |
| TreatCFM000861 | oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_NAD(P)H_as_one_donor,_and_incorporation_of_two_atoms_of_oxygen_into_one_donor racemase_activity,_acting_on_amino_acids_and_derivatives aromatic compound catabolic process 2 iron, 2 sulfur cluster binding protein tyrosine/serine/threonine phosphatase activity nitrogen compound metabolic process protein dephosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 glycine betaine biosynthesis III (plants) chlorophyll cycle starch degradation II Porphyrin and chlorophyll metabolism Glycine, serine and threonine metabolism Nonribosomal peptide structures | details |
| TreatCFM000874 | carbohydrate metabolic process glycerol-3-phosphate dehydrogenase complex glycerol-3-phosphate catabolic process glycerol-3-phosphate metabolic process magnesium_ion_transport glycerol-3-phosphate dehydrogenase [NAD+] activity magnesium_ion_transmembrane_transporter_activity phosphotransferase activity, alcohol group as acceptor oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor NAD binding glycerol-3-phosphate shuttle Amino sugar and nucleotide sugar metabolism Pentose and glucuronate interconversions MAPK signaling pathway - yeast hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM000946 | sirohydrochlorin cobaltochelatase activity cobalamin biosynthetic process Ubiquitin_Proteasome_system, E2: UBC indole-3-acetate activation I siroheme biosynthesis hydroxyjasmonate sulfate biosynthesis | details |
| TreatCFM001192 | mannosylglycoprotein endo-beta-mannosidase activity oxidoreductase_activity,_acting_on_paired_donors,_with_incorporation_or_reduction_of_molecular_oxygen,_NAD(P)H_as_one_donor,_and_incorporation_of_two_atoms_of_oxygen_into_one_donor aromatic compound catabolic process 2 iron, 2 sulfur cluster binding protein tyrosine/serine/threonine phosphatase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 glycine betaine biosynthesis III (plants) starch degradation II Glycine, serine and threonine metabolism hydrolysis and/or rearrangement of glycosidic bonds， Glycoside Hydrolases： GH89 | details |
| TreatCFM001219 | sirohydrochlorin cobaltochelatase activity cobalamin biosynthetic process siroheme biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |