TreatCFM001331 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| spermine biosynthetic process | 0.004796715 | GO:0006597 |
| spermidine biosynthetic process | 0.004796715 | GO:0008295 |
| adenosylmethionine decarboxylase activity | 0.007195901 | GO:0004014 |
| Transcription_related, Transcription factor: faR1 | 0.012504294 | gene family |
| Ubiquitin_Proteasome_system, E2: UBC | 0.012912405 | gene family |
| spermidine biosynthesis I | 0.002589629 | plantCyc |
| spermine biosynthesis | 0.002589629 | plantCyc |
| Arginine and proline metabolism | 0.018955652 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g089610.1 | Adenosylmethionine decarboxylase family protein | AT3G25570 (2.00E-119) |
| Solyc06g072140.2 | flower-specific, phytochrome-associated protein phosphatase 3 | AT3G19980 (3.00E-179) |
| Solyc06g072570.2 | ubiquitin-conjugating enzyme 27 | AT5G50870 (2.00E-84) |
| Solyc06g073210.2 | Far-red impaired responsive (FAR1) family protein | AT2G43280 (2.00E-37) |
| Solyc06g082180.1 | Glutaredoxin family protein | AT5G58530 (5.00E-56) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001028 | proton-transporting ATP synthase complex assembly spermidine biosynthetic process spermine biosynthetic process adenosylmethionine decarboxylase activity double-stranded DNA binding spliceosomal complex nuclear mRNA splicing, via spliceosome mitochondrion Transcription_related, Transcription factor: mTERF spermine biosynthesis spermidine biosynthesis I Arginine and proline metabolism | details |
| TreatCFM001311 | proton-transporting two-sector ATPase complex, catalytic domain tRNA aminoacylation for protein translation ATP hydrolysis coupled proton transport Ubiquitin_Proteasome_system, DUB: JAMM tRNA charging adenosine ribonucleotides de novo biosynthesis triacylglycerol degradation | details |
| TreatCFM001350 | spermine biosynthetic process spermidine biosynthetic process adenosylmethionine decarboxylase activity steroid biosynthetic process Cytochrome_P450, Cytochrome P450: CYP721A Transcription_related, Transcription factor: faR1 Ubiquitin_Proteasome_system, E2: UBC spermidine biosynthesis I UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) spermine biosynthesis superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis L-ascorbate biosynthesis V UDP-sugars interconversion brassinosteroids inactivation Arginine and proline metabolism | details |
| TreatCFM001473 | spermidine biosynthetic process spermine biosynthetic process adenosylmethionine decarboxylase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor NAD binding Ubiquitin_Proteasome_system, E2: UBC spermidine biosynthesis I spermine biosynthesis glutamine biosynthesis III TCA cycle variation V (plant) leucine biosynthesis TCA cycle II (plants and fungi) Citrate cycle (TCA cycle) Valine, leucine and isoleucine biosynthesis Arginine and proline metabolism | details |
| TreatCFM001592 | proteasome core complex, alpha-subunit complex proteasome core complex endopeptidase activity threonine-type endopeptidase activity proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process spermine biosynthetic process spermidine biosynthetic process adenosylmethionine decarboxylase activity Proteasome spermidine biosynthesis I spermine biosynthesis Arginine and proline metabolism | details |
Expression profiles
 Show details about module gene expression profiling |