TreatCFM001380 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| DNA 5'-adenosine monophosphate hydrolase activity | 0.011804576 | GO:0033699 |
| potassium ion binding | 0.021624906 | GO:0030955 |
| pyruvate kinase activity | 0.021624906 | GO:0004743 |
| glycolysis | 0.026503574 | GO:0006096 |
| DNA repair | 0.043291673 | GO:0006281 |
| Transcription_related, Transcription regulator: GNAT | 0.04968991 | gene family |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.030459646 | plantCyc |
| glycolysis IV (plant cytosol) | 0.030459646 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.030459646 | plantCyc |
| 3-phosphoinositide biosynthesis | 0.030459646 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g008660.2 | F-box and associated interaction domains-containing protein | AT4G12560 (2.00E-48) |
| Solyc03g110910.2 | radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | AT5G50320 (0) |
| Solyc04g005270.1 | phosphoinositide 4-kinase gamma 7 | AT2G03890 (0) |
| Solyc06g082710.2 | RNA-binding KH domain-containing protein | AT3G08620 (5.00E-110) |
| Solyc09g005100.2 | APRATAXIN-like | AT5G01310 (0) |
| Solyc09g082970.2 | Pyruvate kinase family protein | AT3G22960 (0) |
| Solyc10g047000.1 | Transducin/WD40 repeat-like superfamily protein | AT1G80670 (1.00E-172) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001274 | protein binding Transcription_related, Transcription factor: NF-YA Protein processing in endoplasmic reticulum | details |
| TreatCFM001275 | mitochondrial matrix Transcription_related, Transcription factor: NF-YA | details |
| TreatCFM001327 | cell wall cell wall modification glycolysis pyruvate kinase activity potassium ion binding N-acetyltransferase_activity iron-sulfur cluster binding pectinesterase activity Transcription_related, Transcription regulator: GNAT hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Pentose and glucuronate interconversions Endocrine resistance Non-alcoholic fatty liver disease (NAFLD) | details |
| TreatCFM001620 | DNA 5'-adenosine monophosphate hydrolase activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation nucleosome assembly tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity DNA repair tRNA charging Aminoacyl-tRNA biosynthesis | details |
| TreatCFM001621 | DNA 5'-adenosine monophosphate hydrolase activity ligase activity, forming aminoacyl-tRNA and related compounds tRNA aminoacylation nucleosome assembly tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity DNA repair Ubiquitin_Proteasome_system, E3 adaptor: DWD tRNA charging Aminoacyl-tRNA biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |