TreatCFM001478 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| cell cycle arrest | 0.001007368 | GO:0007050 |
| cyclin-dependent protein kinase inhibitor activity | 0.003022104 | GO:0004861 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.038411117 | gene family |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc09g075080.2 | F-box family protein | AT4G02440 (2.00E-105) |
| Solyc09g076050.2 | FRIGIDA-like protein | AT3G22440 (7.00E-170) |
| Solyc09g091780.2 | Cyclin-dependent kinase inhibitor family protein | AT5G48820 (8.00E-30) |
| Solyc10g044720.1 | ||
| Solyc12g089140.1 | Erythronate-4-phosphate dehydrogenase family protein | AT1G75180 (1.00E-92) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000525 | SAGA-type_complex aspartic-type endopeptidase activity transcription_corepressor_activity microtubule Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | details |
| TreatCFM000581 | transcription coactivator activity Transcription_related, Transcription regulator: Coactivator p15 | details |
| TreatCFM000582 | small protein activating enzyme activity Ubiquitin_Proteasome_system, E1: ThiF | details |
| TreatCFM000595 | small protein activating enzyme activity carbohydrate binding Ubiquitin_Proteasome_system, E1: ThiF Ubiquitin_Proteasome_system, E3 adaptor: SKP1 Homologous recombination Lipopolysaccharide biosynthesis | details |
| TreatCFM000666 | carbohydrate binding carbohydrate metabolic process Lipopolysaccharide biosynthesis | details |
| TreatCFM001399 | microtubule-based process microtubule GTPase activity coenzyme binding pyrimidine nucleobases salvage I superpathway of pyrimidine ribonucleosides salvage superpathway of pyrimidine nucleobases salvage pyrimidine ribonucleosides salvage I pyrimidine salvage pathway choline biosynthesis III plant sterol biosynthesis phosphatidate metabolism, as a signaling molecule phospholipases Steroid biosynthesis Nicotinate and nicotinamide metabolism Pyrimidine metabolism Choline metabolism in cancer Drug metabolism - other enzymes | details |
| TreatCFM001410 | microtubule microtubule-based process GTPase activity hydrolase activity aspartic-type endopeptidase activity pyrimidine salvage pathway guanosine nucleotides degradation II guanosine nucleotides degradation I adenosine nucleotides degradation I UTP and CTP dephosphorylation I Nicotinate and nicotinamide metabolism Purine metabolism | details |
| TreatCFM001527 | carbohydrate metabolic process pentose phosphate pathway (oxidative branch) I Pentose phosphate pathway | details |
| TreatCFM001577 | Ubiquitin_Proteasome_system, E3: UBR-box | details |
| TreatCFM001636 | formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |