LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE001179

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE001179

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE001179AT5G22050.2Protein kinase superfamily protein1positive
GWHGAAZE006378AT4G18030.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.93positive
GWHGAAZE009377AT5G58490.1NAD(P)-binding Rossmann-fold superfamily protein0.93positive
GWHGAAZE033299AT5G14390.1alpha/beta-Hydrolases superfamily protein0.93positive
GWHGAAZE013918AT3G27230.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.93positive
GWHGAAZE027182AT4G27435.1Protein of unknown function (DUF1218)0.92positive
GWHGAAZE003520AT4G23060.1IQ-domain 220.92positive
GWHGAAZE014448AT5G60920.1COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family0.92positive
GWHGAAZE026496AT1G06850.1basic leucine-zipper 520.92positive
GWHGAAZE025285AT5G14790.1ARM repeat superfamily protein0.91positive
GWHGAAZE008997AT2G27810.1nucleobase-ascorbate transporter 120.91positive
GWHGAAZE024916AT4G00570.1NAD-dependent malic enzyme 20.91positive
GWHGAAZE033294AT3G27470.2Protein of unknown function (DUF707)0.91positive
GWHGAAZE009004AT5G22740.1cellulose synthase-like A020.91positive
GWHGAAZE004519AT1G29790.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.91positive
GWHGAAZE006136----0.9positive
GWHGAAZE003135AT3G55020.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.9positive
GWHGAAZE024556AT5G35160.2Endomembrane protein 70 protein family0.9positive
GWHGAAZE004887AT4G22290.1Ubiquitin-specific protease family C19-related protein0.9positive
GWHGAAZE022262AT3G17120.2transmembrane protein;(source:Araport11)0.9positive
GWHGAAZE016260AT1G34630.1transmembrane protein;(source:Araport11)0.9positive
GWHGAAZE014338AT4G39860.1hematological/neurological-like protein;(source:Araport11)0.9positive
GWHGAAZE002585AT1G78560.1Sodium Bile acid symporter family0.9positive
GWHGAAZE000903AT5G60640.1PDI-like 1-40.9positive
GWHGAAZE029206AT1G11680.1CYTOCHROME P450 51G10.89positive
GWHGAAZE006490AT1G12000.1Phosphofructokinase family protein0.89positive
GWHGAAZE010367AT1G08760.1Plant protein of unknown function (DUF936)0.89positive
GWHGAAZE019890AT4G30020.1PA-domain containing subtilase family protein0.89positive
GWHGAAZE002728AT5G54400.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.89positive
GWHGAAZE003148AT3G55020.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.89positive
GWHGAAZE026495AT2G40620.1Basic-leucine zipper (bZIP) transcription factor family protein0.89positive
GWHGAAZE015118AT2G01970.1Endomembrane protein 70 protein family0.89positive
GWHGAAZE002657AT5G60860.1RAB GTPase homolog A1F0.89positive
GWHGAAZE021892AT1G04430.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.89positive
GWHGAAZE002299AT3G22104.1Phototropic-responsive NPH3 family protein0.89positive
GWHGAAZE026165AT4G31590.1Cellulose-synthase-like C50.88positive
GWHGAAZE005891AT5G41940.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.88positive
GWHGAAZE026988AT2G04780.2FASCICLIN-like arabinoogalactan 70.88positive
GWHGAAZE014862AT5G66460.1Glycosyl hydrolase superfamily protein0.88positive
GWHGAAZE012340AT3G62220.1Protein kinase superfamily protein0.88positive
GWHGAAZE033231AT5G14790.1ARM repeat superfamily protein0.88positive
GWHGAAZE006523AT1G61850.1phospholipases;galactolipases0.88positive
GWHGAAZE003923AT1G03520.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.88positive
GWHGAAZE011326AT2G30980.1SHAGGY-related protein kinase dZeta0.88positive
GWHGAAZE025449AT3G26935.1DHHC-type zinc finger family protein0.88positive
GWHGAAZE027174AT3G15380.1Plasma-membrane choline transporter family protein0.88positive
GWHGAAZE004398AT2G34680.1Outer arm dynein light chain 1 protein0.87positive
GWHGAAZE011037----0.87positive
GWHGAAZE006429AT5G47780.1galacturonosyltransferase 40.87positive
GWHGAAZE018408AT4G39050.1Kinesin motor family protein0.87positive
GWHGAAZE025663AT1G65980.1thioredoxin-dependent peroxidase 10.87positive
GWHGAAZE007801AT2G22590.1UDP-Glycosyltransferase superfamily protein0.87positive
GWHGAAZE021752AT1G05410.1Protein of unknown function (DUF1423)0.87positive
GWHGAAZE022237AT3G66658.2aldehyde dehydrogenase 22A10.87positive
GWHGAAZE010340AT1G08760.1Plant protein of unknown function (DUF936)0.87positive
GWHGAAZE003560AT3G49050.1alpha/beta-Hydrolases superfamily protein0.87positive
GWHGAAZE017382AT1G15215.2Encodes SHH1, a homeodomain protein required for DNA methylation. It is an atypical RNA-directed DNA methylation component, and functions in transcriptional silencing through both DNA methylation-dependent and -independent pathways.0.87positive
GWHGAAZE000987AT2G28150.1Domain of unknown function (DUF966)0.87positive
GWHGAAZE017407AT1G45688.1CC1 is a plant specific gene that interacts with with the cellulose synthase complex and microtubules. It appears to play a role in localizing CESA to the membrane, microtuble dynamics , particularly during salt stress.0.87positive
GWHGAAZE006483AT4G22290.1Ubiquitin-specific protease family C19-related protein0.87positive
GWHGAAZE029771AT2G14830.2Regulator of Vps4 activity in the MVB pathway protein0.87positive
GWHGAAZE028845AT4G32330.3TPX2 (targeting protein for Xklp2) protein family0.87positive
GWHGAAZE027868AT4G17770.1trehalose phosphatase/synthase 50.87positive
GWHGAAZE028515AT1G27600.2Nucleotide-diphospho-sugar transferases superfamily protein0.87positive
GWHGAAZE009177AT5G60050.1BTB/POZ domain-containing protein0.86positive
GWHGAAZE026396AT4G00100.1ribosomal protein S13A0.86positive
GWHGAAZE024953AT3G61050.2Calcium-dependent lipid-binding (CaLB domain) family protein0.86positive
GWHGAAZE002631AT2G42590.3general regulatory factor 90.86positive
GWHGAAZE000627AT5G58520.1Protein kinase superfamily protein0.86positive
GWHGAAZE017678AT3G48610.1non-specific phospholipase C60.86positive
GWHGAAZE025199AT5G05170.1Cellulose synthase family protein0.86positive
GWHGAAZE003366AT2G40620.1Basic-leucine zipper (bZIP) transcription factor family protein0.86positive
GWHGAAZE002291AT3G22104.1Phototropic-responsive NPH3 family protein0.86positive
GWHGAAZE033230AT5G40240.1nodulin MtN21 /EamA-like transporter family protein0.86positive
GWHGAAZE031477AT4G01220.1Nucleotide-diphospho-sugar transferase family protein0.86positive
GWHGAAZE030568AT1G74910.2ADP-glucose pyrophosphorylase family protein0.86positive


Expression profiling, GSEA and motif analysis